Related Experiment Video
Updated: Mar 14, 2026

Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography
Published on: September 20, 2016
Crystal structure of rofecoxib bound to human cyclooxygenase-2
Benjamin J Orlando1, Michael G Malkowski1
1Department of Structural Biology, The State University of New York at Buffalo and the Hauptman-Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203, USA.
Abstract:
Rofecoxib (Vioxx) was one of the first selective cyclooxygenase-2 (COX-2) inhibitors (coxibs) to be approved for use in humans. Within five years after its release to the public, Vioxx was withdrawn from the market owing to the adverse cardiovascular effects of the drug. Despite the widespread knowledge of the development and withdrawal of Vioxx, relatively little is known at the molecular level about how the inhibitor binds to COX-2. Vioxx is unique in that the inhibitor contains a methyl sulfone moiety in place of the sulfonamide moiety found in other coxibs such as celecoxib and valdecoxib. Here, new crystallization conditions were identified that allowed the structural determination of human COX-2 in complex with Vioxx and the structure was subsequently determined to 2.7 Å resolution. The crystal structure provides the first atomic level details of the binding of Vioxx to COX-2. As anticipated, Vioxx binds with its methyl sulfone moiety located in the side pocket of the cyclooxygenase channel, providing support for the isoform selectivity of this drug.
Insights
Rofecoxib (Vioxx) binding to cyclooxygenase-2 (COX-2) was structurally determined. This reveals how Vioxx
Area of Science:
- Biochemistry
- Structural Biology
- Pharmacology
Background:
- Rofecoxib (Vioxx) was a selective cyclooxygenase-2 (COX-2) inhibitor (coxib) withdrawn due to cardiovascular risks.
- The molecular mechanism of Vioxx binding to COX-2 remained largely unknown.
- Vioxx's unique methyl sulfone moiety distinguishes it from other coxibs.
Purpose of the Study:
- To elucidate the molecular-level binding of Vioxx to human COX-2.
- To determine the crystal structure of human COX-2 in complex with Vioxx.
Main Methods:
- Identification of novel crystallization conditions for human COX-2.
- X-ray crystallography to determine the structure of the COX-2-Vioxx complex.
- Structural analysis at 2.7 Å resolution.
Main Results:
- The crystal structure of human COX-2 complexed with Vioxx was determined.
- Atomic-level details of Vioxx binding to COX-2 are provided for the first time.
- Vioxx binds via its methyl sulfone moiety in the COX-2 side pocket, supporting isoform selectivity.
Conclusions:
- The study provides the first atomic resolution structure of Vioxx bound to COX-2.
- The findings explain the binding mode and support the isoform selectivity of Vioxx.
- Understanding this interaction may inform the design of safer COX-2 inhibitors.
More Related Videos
14:02Optimizing the Genetic Incorporation of Chemical Probes into GPCRs for Photo-crosslinking Mapping and Bioorthogonal Chemistry in Live Mammalian Cells
Published on: April 9, 2018
10:29Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Related Concept Videos
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal...
Chair Conformation of Cyclohexane
The hydrogen atoms linked to carbons are arranged in two different axial and equatorial orientations to achieve this...
Protein-Drug Binding: Mechanism and Kinetics
Various forces drive these interactions, including hydrogen bonds, hydrophobic interactions, ionic bonds, electrostatic interactions, and van der Waals forces. These bonds enable drugs to bind to specific sites on proteins,...
Frost Circles for Different Conjugated Systems
Conformations of Cycloalkanes
Drug-Receptor Bonds
In...