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Published on: June 23, 2019
Pyrazolo[1,5a]pyrimidines as a new class of FUSE binding protein 1 (FUBP1) inhibitors
Stefanie Hauck1, Kerstin Hiesinger2, Sabrina Khageh Hosseini1
1Georg-Speyer-Haus, Institute for Tumor Biology and Experimental Therapy, Paul-Ehrlich-Straße 42-44, D-60596 Frankfurt/Main, Germany.
Abstract:
The transcriptional regulator FUSE binding protein 1 (FUBP1) is aberrantly upregulated in various malignancies, fulfilling its oncogenic role by the deregulation of critical genes involved in cell cycle control and apoptosis regulation. Thus, the pharmaceutical inhibition of this protein would represent an encouraging novel targeted chemotherapy. Here, we demonstrate the identification and initial optimization of a pyrazolo[1,5a]pyrimidine-based FUBP1 inhibitor derived from medium throughput screening, which interferes with the binding of FUBP1 to its single stranded target DNA FUSE. We were able to generate a new class of FUBP1 interfering molecules with in vitro and biological activity. In biophysical assays, we could show that our best inhibitor, compound 6, potently inhibits the binding of FUBP1 to the FUSE sequence with an IC50 value of 11.0μM. Furthermore, hepatocellular carcinoma cells exhibited sensitivity towards the treatment with compound 6, resulting in reduced cell expansion and induction of cell death. Finally, we provide insights into the corresponding SAR landscape, leading to a prospective enhancement in potency and cellular efficacy.
Insights
Researchers identified a novel pyrazolo[1,5a]pyrimidine compound that inhibits FUSE binding protein 1 (FUBP1), a key cancer-driving protein. This targeted chemotherapy approach shows promise in reducing cancer cell growth and inducing cell death.
Area of Science:
- Molecular Biology
- Medicinal Chemistry
- Oncology
Background:
- FUSE binding protein 1 (FUBP1) is a transcriptional regulator often overexpressed in cancers.
- FUBP1's aberrant activity drives oncogenesis by disrupting cell cycle and apoptosis pathways.
- Targeting FUBP1 presents a potential strategy for novel cancer chemotherapy.
Purpose of the Study:
- To identify and optimize inhibitors of FUSE binding protein 1 (FUBP1).
- To develop a new class of FUBP1-targeting molecules with therapeutic potential.
- To investigate the efficacy of FUBP1 inhibitors in cancer models.
Main Methods:
- Medium-throughput screening to identify initial hit compounds.
- Chemical optimization of pyrazolo[1,5a]pyrimidine scaffolds.
- Biophysical assays to assess FUBP1-FUSE DNA binding inhibition.
- In vitro studies using hepatocellular carcinoma cells.
Main Results:
- A novel class of pyrazolo[1,5a]pyrimidine-based FUBP1 inhibitors was generated.
- Compound 6 demonstrated potent inhibition of FUBP1 binding to its FUSE DNA target (IC50 = 11.0 μM).
- Hepatocellular carcinoma cells treated with compound 6 showed reduced proliferation and increased cell death.
Conclusions:
- The identified pyrazolo[1,5a]pyrimidine derivatives represent a promising new avenue for FUBP1-targeted cancer therapy.
- Compound 6 exhibits significant in vitro and cellular activity against hepatocellular carcinoma.
- Further optimization of these inhibitors holds potential for enhanced therapeutic efficacy.
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