Related Experiment Video
Updated: Mar 13, 2026

Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
Published on: February 15, 2016
A theoretical study of weak interactions in phenylenediamine homodimer clusters
Chengqian Yuan1, Haiming Wu1, Meiye Jia2
1Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China. zxluo@iccas.ac.cn jnyao@iccas.ac.cn and Graduate University of Chinese Academy of Sciences (GUCAS), Beijing 100049, P. R. China.
Abstract:
Weak intermolecular interactions in phenylenediamine dimer (pdd) clusters are studied by dispersion-corrected density functional theory (DFT) calculations. Along with the optimization of geometric structures and the calculation of interaction energies, we employ molecular electrostatic potential (MEP) mapping, natural bond orbital (NBO) analysis and quantum theory of atoms in molecule (AIM) to analyze the origin and relative energetic contributions of the weak interactions in these pdd systems. It is revealed that the most stable o-phenylenediamine dimer (opdd) cluster is dominated by N-HN hydrogen bonds, the p-phenylenediamine dimer (ppdd) cluster is largely stabilized by N-Hπ and ππ stacking interactions, while the m-phenylenediamine dimer (mpdd) cluster is mainly held by a combination of n → π*, C-Hπ and C-HN interactions. Energy decomposition analysis (EDA) of the total interaction energies of these clusters further demonstrates that the weak intermolecular interactions are associated with electrostatic and dispersion contributions. Structural spectroscopic analysis is also addressed depicting the coexistence of multiple intermolecular interactions which give rise to the spectral variation in wavenumbers of the infrared and Raman activities. Insights into the weak interactions of pdds help us to understand the molecular mechanisms involved in biochemistry and self-assembly materials.
More Related Videos
08:54Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
Published on: January 25, 2020
10:52Line Shape Analysis of Dynamic NMR Spectra for Characterizing Coordination Sphere Rearrangements at a Chiral Rhenium Polyhydride Complex
Published on: July 27, 2022
Related Concept Videos
Aryldiazonium Salts to Azo Dyes: Diazo Coupling
Crystal Field Theory - Tetrahedral and Square Planar Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Noncovalent Attractions in Biomolecules
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Noncovalent Attractions in Biomolecules
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
Valence Bond Theory