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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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Glycan Profiling of Plant Cell Wall Polymers using Microarrays
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Carbohydrate Microarray Technology Applied to High-Throughput Mapping of Plant Cell Wall Glycans Using Comprehensive

Stjepan Krešimir Kračun1, Jonatan Ulrik Fangel2, Maja Gro Rydahl2

  • 1Section for Plant Glycobiology, Department for Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark. skkracun@plen.ku.dk.

Methods in Molecular Biology (Clifton, N.J.)
|October 16, 2016
PubMed
Summary
This summary is machine-generated.

Microarray technology, including the CoMPP technique, offers high-throughput methods for analyzing plant cell wall glycans. This approach is crucial for understanding plant glycomics and the complex structures of plant cell walls.

Keywords:
Carbohydrate microarraysGlycan profilingPlant cell wallsPlant glycansPlant glycomics

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Area of Science:

  • Plant Biology
  • Glycoscience
  • Biotechnology

Background:

  • Plant cell walls are vital for plant structure, physiology, growth, and development.
  • The plant glycome, particularly cell wall composition, is complex and requires advanced analytical methods.
  • Understanding cell wall structure and function is critical for both fundamental research and applied science.

Purpose of the Study:

  • To describe recent microarray-based techniques for analyzing plant cell walls.
  • To provide an overview of contemporary carbohydrate microarray techniques in glycoscience.
  • To detail the Comprehensive Microarray Polymer Profiling (CoMPP) technique for high-throughput glycan mapping.

Main Methods:

  • Application of microarray technology for high-throughput analysis.
  • Utilizing carbohydrate microarrays for glycoscience research.
  • Detailed experimental procedure for the CoMPP technique.

Main Results:

  • Microarray technology meets the demand for high-throughput analysis of plant cell walls.
  • The CoMPP technique enables robust and high-throughput mapping of plant cell wall glycans.
  • Demonstrated applicability of microarrays to plant glycomics.

Conclusions:

  • Microarray techniques are powerful tools for plant cell wall research.
  • The CoMPP method exemplifies the capabilities of microarrays in plant glycomics.
  • Advanced techniques are essential for deciphering the complexity of plant cell walls.