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Methods to Discover Alternative Promoter Usage and Transcriptional Regulation of Murine Bcrp1
Published on: May 27, 2016
SP1 is a transcriptional regulator of URG-4/URGCP gene in hepatocytes
1Department of Molecular Biology and Genetics, Faculty of Science and Literature, Balikesir University, Balıkesir, Turkey.
Abstract:
URG-4/URGCP gene was implicated as an oncogene that contributes hepatocarcinogenesis regulated by Hepatitis-B-virus-encoded X antigen. However, the mechanism of transcriptional regulation of this gene remains largely unknown. For this reason, we focused on the functional analyses of URG4/URGCP promoter site. First, 545 bp of URG-4/URGCP, -482/+63, and three different 5'-truncated constructs, -109/+63, -261/+63, -344/+63 were cloned by PCR-based approach into pMetLuc luciferase reporter vector. Transient transfection assay showed that, -109/+63 construct has the highest activity. The promoter of URG-4/URGCP gene contained a CpG island region spanning 400 bp from translation start site. Many SP1/GC boxes, named GC-1 to GC-10 are present in 545 bp of URG-4/URGCP promoter. Because of presence of multiple SP1/GC boxes, promoter constructs were transiently co-transfected with SP1 expression vector to determine the effect of SP1 on URG-4/URGCP promoter activity. Co-transfection analyses induced the basal activity of -268/+63, -344/+63 and -482/+63 constructs. EMSA analysis of GC-4, GC-5, GC-6 and GC-7 binding sites located in -128/-148 bases, showed two DNA-protein binding complexes. Competition assay and super-shifted complexes indicated these complexes are resulted from SP1 binding. Also, site-directed mutagenesis of potential SP1 binding sites diminished both DNA-protein complexes and SP1-mediated upregulation of URG-4 promoter activity. These findings are valuable for understanding transcriptional regulation of URG4/URGCP that has a pivotal role in cancer progression.
Insights
The URG4/URGCP gene, an oncogene in liver cancer, is transcriptionally regulated by the SP1 transcription factor. This study identifies key SP1 binding sites within the URG4/URGCP promoter, crucial for its role in cancer progression.
Area of Science:
- Molecular Biology
- Oncology
- Hepatology
Background:
- The URG4/URGCP gene is an oncogene implicated in hepatocarcinogenesis, potentially regulated by the Hepatitis B virus X antigen.
- The precise mechanisms governing the transcriptional regulation of URG4/URGCP remain largely unelucidated.
Purpose of the Study:
- To functionally analyze the promoter region of the URG4/URGCP gene.
- To investigate the role of the SP1 transcription factor in regulating URG4/URGCP expression.
Main Methods:
- Cloning of URG4/URGCP promoter constructs (-482/+63 and 5' truncated variants) into a luciferase reporter vector.
- Transient transfection assays and co-transfection with SP1 expression vector.
- Electrophoretic Mobility Shift Assay (EMSA) and site-directed mutagenesis to identify and confirm SP1 binding sites.
Main Results:
- The -109/+63 promoter construct exhibited the highest activity.
- Co-transfection with SP1 upregulated the activity of longer promoter constructs (-268/+63, -344/+63, -482/+63).
- EMSA and mutagenesis confirmed that SP1 binds to specific sites (GC-4 to GC-7) within the URG4/URGCP promoter, mediating transcriptional upregulation.
Conclusions:
- The SP1 transcription factor plays a critical role in the transcriptional regulation of the URG4/URGCP gene.
- Identification of SP1 binding sites provides insights into the regulatory network of URG4/URGCP in hepatocarcinogenesis.
- These findings contribute to understanding the oncogenic role of URG4/URGCP in liver cancer progression.
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