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Cyclin D1 as a therapeutic target of renal cell carcinoma- a combined transcriptomics, tissue microarray and
Sajjad Karim1, Jaudah A Al-Maghrabi2,3, Hasan M A Farsi4
1Center of Excellence in Genomic Medicine Research, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia. skarim1@kau.edu.sa.
Background:
Renal cell carcinoma (RCC) is a seventh ranked malignancy with poor prognosis. RCC is lethal at metastatic stage as it does not respond to conventional systemic treatments, and there is an urgent need to find out promising novel biomarkers for effective treatment. The goal of this study was to evaluate the biomarkers that can be potential therapeutic target and predict effective inhibitors to treat the metastatic stage of RCC.
Methods:
We conducted transcriptomic profiling to identify differentially expressed genes associated with RCC. Molecular pathway analysis was done to identify the canonical pathways and their role in RCC. Tissue microarrays (TMA) based immunohistochemical stains were used to validate the protein expression of cyclinD1 (CCND1) and were scored semi-quantitatively from 0 to 3+ on the basis of absence or presence of staining intensity in the tumor cell. Statistical analysis determined the association of CCND1 expression with RCC. Molecular docking analyses were performed to check the potential of two natural inhibitors, rutin and curcumin to bind CCND1.
Results:
We detected 1490 significantly expressed genes (1034, upregulated and 456, downregulated) in RCC using cutoff fold change 2 and p value < 0.05. Hes-related family bHLH transcription factor with YRPW motif 1 (HEY1), neuropilin 2 (NRP2), lymphoid enhancer-binding factor 1 (LEF1), and histone cluster 1 H3h (HIST1H3H) were most upregulated while aldolase B, fructose-bisphosphate (ALDOB), solute carrier family 12 (SLC12A1), calbindin 1 (CALB1) were the most down regulated genes in our dataset. Functional analysis revealed Wnt/β-catenin signaling as the significantly activated canonical pathway (z score = 2.53) involving cyclin D1 (CCND1). CCND1 was overexpressed in transcriptomic studies (FC = 2.26, p value = 0.0047) and TMA results also showed the positive expression of CCND1 in 53 % (73/139) of RCC cases. The ligands - rutin and curcumin bounded with CCND1 with good affinity.
Conclusion:
CCND1 was one of the important upregulated gene identified in microarray and validated by TMA. Docking study showed that CCND1 may act as a potential therapeutic target and its inhibition could focus on the migratory, invasive, and metastatic potential of RCC. Further in vivo and in vitro molecular studies are needed to investigate the therapeutic target potential of CCND1 for RCC treatment.
Insights
This study identifies cyclin D1 (CCND1) as a key biomarker in metastatic renal cell carcinoma (RCC). Inhibiting CCND1 shows promise for treating advanced RCC, offering new therapeutic avenues.
Area of Science:
- Oncology
- Molecular Biology
- Genomics
Background:
- Renal cell carcinoma (RCC) is a leading cause of cancer death with poor prognosis, especially at the metastatic stage.
- Current systemic treatments are ineffective for metastatic RCC, highlighting the need for novel biomarkers and therapeutic targets.
- Identifying effective inhibitors is crucial for managing advanced RCC.
Purpose of the Study:
- To evaluate potential biomarkers for targeted therapy in metastatic RCC.
- To identify effective inhibitors for treating the metastatic stage of RCC.
- To explore the role of cyclin D1 (CCND1) as a therapeutic target.
Main Methods:
- Transcriptomic profiling to identify differentially expressed genes in RCC.
- Molecular pathway analysis to determine key signaling pathways involved in RCC.
- Immunohistochemical validation of CCND1 protein expression using tissue microarrays (TMA).
- Molecular docking to assess the binding potential of natural inhibitors (rutin, curcumin) to CCND1.
Main Results:
- 1490 differentially expressed genes were identified in RCC, including upregulated genes like HEY1, NRP2, LEF1, HIST1H3H and downregulated genes like ALDOB, SLC12A1, CALB1.
- Wnt/β-catenin signaling was identified as a significantly activated canonical pathway involving CCND1.
- CCND1 was overexpressed in RCC (FC=2.26, p=0.0047) and detected in 53% of cases via TMA.
- Rutin and curcumin demonstrated favorable binding affinity to CCND1.
Conclusions:
- CCND1 is a significant upregulated gene in RCC, validated by TMA.
- CCND1 represents a potential therapeutic target for inhibiting migration, invasion, and metastasis in RCC.
- Further in vitro and in vivo studies are warranted to confirm CCND1's therapeutic potential in RCC treatment.
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