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Published on: November 2, 2021
Expanded Substrate Activity of OXA-24/40 in Carbapenem-Resistant Acinetobacter baumannii Involves Enhanced Binding
Michael W Staude1, David A Leonard2, Jeffrey W Peng1
1Department of Chemistry and Biochemistry, University of Notre Dame , Notre Dame, Indiana 46556, United States.
Abstract:
Gram-negative bacteria resist β-lactam antibiotics primarily by deploying β-lactamase proteins that hydrolytically destroy the antibiotics. In clinical settings, these bacteria are producing variant β-lactamases with "gain-of-activity" mutations that inactivate a broader range of β-lactams. Learning how these mutations broaden substrate activity is important for coping with β-lactam resistance. Here, we investigate a gain of activity mutation in OXA-24/40, a carbapenem-hydrolyzing class D β-lactamase (CHDL) in Acinetobacter baumannii. OXA-24/40 was originally active against penicillin and carbapenem classes of β-lactams, but a clinical variant of OXA-24/40, the single-site substitution mutant P227S, has emerged with expanded activity that now includes advanced cephalosporins and the monobactam aztreonam. Using solution-state nuclear magnetic resonance (NMR) spectroscopy, we have compared the site-specific backbone dynamics of wild-type OXA-24/40 and the P227S variant. P227S changes local backbone flexibility in segments that are important for both binding and hydrolysis of carbapenem and cephalosporin substrates. Our results suggest that mutation-induced changes in sequence-specific dynamics can expand substrate activity and thus highlight the role of protein conformational dynamics in antibiotic resistance. To the best of our knowledge, this is the first NMR study of CHDL conformational dynamics and its impact on the expansion of β-lactam antibiotic resistance.
Insights
A mutation in OXA-24/40 beta-lactamase enhances its activity against advanced antibiotics. This study reveals how protein dynamics changes contribute to antibiotic resistance in Gram-negative bacteria.
Area of Science:
- Microbiology
- Biochemistry
- Structural Biology
Background:
- Gram-negative bacteria employ beta-lactamase enzymes to resist beta-lactam antibiotics.
- Clinical isolates exhibit beta-lactamase variants with mutations conferring "gain-of-activity," broadening antibiotic inactivation.
- Understanding these mutations is crucial for combating rising antibiotic resistance.
Purpose of the Study:
- To investigate the impact of a specific mutation (P227S) on the activity of OXA-24/40, a carbapenem-hydrolyzing class D beta-lactamase (CHDL).
- To elucidate the role of protein conformational dynamics in the expanded substrate activity of beta-lactamases.
Main Methods:
- Utilized solution-state Nuclear Magnetic Resonance (NMR) spectroscopy.
- Compared site-specific backbone dynamics between wild-type OXA-24/40 and its P227S variant.
- Analyzed Acinetobacter baumannii clinical isolates.
Main Results:
- The P227S mutation in OXA-24/40 expanded its activity to include advanced cephalosporins and aztreonam.
- This mutation altered local backbone flexibility in key regions involved in substrate binding and hydrolysis.
- Demonstrated a link between mutation-induced dynamics and broadened substrate specificity.
Conclusions:
- Mutation-induced changes in protein dynamics can enhance beta-lactamase activity against a wider range of antibiotics.
- Protein conformational dynamics play a significant role in the evolution of antibiotic resistance.
- This is the first NMR study detailing CHDL conformational dynamics and its role in expanding beta-lactam resistance.
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