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Updated: Mar 12, 2026

Identifying PD-1/PD-L1 Inhibitors with Surface Plasmon Resonance Technology
Published on: May 2, 2025
Structural basis of checkpoint blockade by monoclonal antibodies in cancer immunotherapy
Ju Yeon Lee1, Hyun Tae Lee1, Woori Shin1
1Department of Chemistry, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea.
Abstract:
Cancer cells express tumour-specific antigens derived via genetic and epigenetic alterations, which may be targeted by T-cell-mediated immune responses. However, cancer cells can avoid immune surveillance by suppressing immunity through activation of specific inhibitory signalling pathways, referred to as immune checkpoints. In recent years, the blockade of checkpoint molecules such as PD-1, PD-L1 and CTLA-4, with monoclonal antibodies has enabled the development of breakthrough therapies in oncology, and four therapeutic antibodies targeting these checkpoint molecules have been approved by the FDA for the treatment of several types of cancer. Here, we report the crystal structures of checkpoint molecules in complex with the Fab fragments of therapeutic antibodies, including PD-1/pembrolizumab, PD-1/nivolumab, PD-L1/BMS-936559 and CTLA-4/tremelimumab. These complex structures elucidate the precise epitopes of the antibodies and the molecular mechanisms underlying checkpoint blockade, providing useful information for the improvement of monoclonal antibodies capable of attenuating checkpoint signalling for the treatment of cancer.
Insights
Cancer cells evade immune surveillance via immune checkpoints. This study reveals crystal structures of checkpoint inhibitors like PD-1 and CTLA-4, offering insights into improving cancer immunotherapy treatments.
Area of Science:
- Immunology
- Structural Biology
- Oncology
Background:
- Cancer cells utilize immune checkpoints, such as PD-1, PD-L1, and CTLA-4, to evade T-cell-mediated immune responses.
- Monoclonal antibodies targeting these immune checkpoints have emerged as effective cancer therapies.
- Four such antibodies targeting PD-1, PD-L1, and CTLA-4 are FDA-approved for treating various cancers.
Purpose of the Study:
- To elucidate the precise epitopes and molecular mechanisms of immune checkpoint blockade.
- To provide structural insights for the development of improved cancer immunotherapies.
Main Methods:
- X-ray crystallography was employed to determine the structures of checkpoint molecules.
- Complexes of checkpoint molecules with therapeutic antibody Fab fragments were analyzed, including PD-1/pembrolizumab, PD-1/nivolumab, PD-L1/BMS-936559, and CTLA-4/tremelimumab.
Main Results:
- Crystal structures of PD-1, PD-L1, and CTLA-4 in complex with therapeutic antibody fragments were determined.
- These structures precisely map the antibody epitopes on the checkpoint molecules.
- The findings reveal the molecular basis of checkpoint blockade by these antibodies.
Conclusions:
- The determined structures offer valuable information for enhancing the efficacy of monoclonal antibodies targeting immune checkpoint signaling.
- This research contributes to the advancement of cancer immunotherapy by providing a deeper understanding of antibody-target interactions.
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