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Big Data access and infrastructure for modern biology: case studies in data repository utility
Nathan C Boles1, Tyler Stone2, Charles Bergeron2
1Neural Stem Cell Institute, Rensselaer, New York.
Annals of the New York Academy of Sciences
|November 2, 2016
Summary
Researchers can now access vast amounts of biological data thanks to advanced tools. This paper explores the resources and infrastructure needed to effectively manage and analyze this Big Data for scientific discovery.
Area of Science:
- * Computational Biology and Bioinformatics
- * Genomics and Epigenomics
- * Neuroscience and Systems Biology
Background:
- * Modern experimental techniques, including high-throughput sequencing, multichannel electrophysiology, and advanced imaging, generate massive datasets.
- * Accessibility of Big Data is increasing for researchers, moving beyond large institutions.
- * Challenges exist in data handling, storage, and analysis for individual researchers.
Purpose of the Study:
- * To assess the essential resources for engaging with Big Data in research.
- * To review current data analysis pipelines and their capabilities.
- * To highlight data repository case studies and support initiatives.
Main Methods:
- * Literature review of Big Data resources and tools.
- * Survey of contemporary data analysis pipelines.
- * Analysis of data repository case studies and support programs.
Main Results:
- * Significant data generation capabilities are now widely available.
- * Resource and skill limitations hinder individual researcher's data utilization.
- * A need for standardized pipelines and accessible repositories is evident.
Conclusions:
- * Effective utilization of Big Data requires strategic resource allocation and skill development.
- * Development of robust data management and analysis infrastructure is crucial.
- * Support from institutions and programs is vital for advancing Big Data research.
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