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Updated: Mar 12, 2026

Monitoring Equilibrium Changes in RNA Structure by 'Peroxidative' and 'Oxidative' Hydroxyl Radical Footprinting
Published on: October 17, 2011
The Stability of α-Hydroperoxyalkyl Radicals
Josep M Anglada1,2, Ramon Crehuet2, Joseph S Francisco1
1College of Arts and Sciences, University of Nebraska-Lincoln, 1223 Oldfather Hall, Lincoln, NE, 68588-0312, United States.
Abstract:
High-level ab initio and Born-Oppenheimer molecular dynamic calculations have been carried out on a series of hydroperoxyalkyl (α-QOOH) radicals with the aim of investigating the stability and unimolecular decomposition mechanism into QO+OH of these species. Dissociation was shown to take place through rotation of the C-O(OH) bond rather than through elongation of the CO-OH bond. Through the C-O(OH) rotation, the unpaired electron of the radical overlaps with the electron density on the O-OH bond, and from this overlap the C=O π bond forms and the O-OH bond breaks spontaneously. The CH2 OOH, CH(CH3 )OOH, CH(OH)OOH, and α-hydroperoxycycloheptadienyl radical were found to decompose spontaneously, but the CH(CHO)OOH has a decomposition energy barrier of 5.95 kcal mol-1 owing to its steric and electronic features. The systems studied in this work provide the first insights into how structural and electronic effects govern the stabilizing influence on elusive α-QOOH radicals.
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