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Screening Explorer-An Interactive Tool for the Analysis of Screening Results
Charly Empereur-Mot1, Jean-François Zagury1, Matthieu Montes1
1Laboratoire Génomique Bioinformatique et Applications, EA 4627, Conservatoire National des Arts et Métiers , 292 rue Saint Martin, 75003 Paris, France.
Journal of Chemical Information and Modeling
|November 4, 2016
Summary
Screening Explorer is a new web tool for evaluating screening experiments. It interactively links ROC, predictiveness, and enrichment metrics for easier analysis of drug discovery data.
Area of Science:
- Computational chemistry
- Bioinformatics
- Drug discovery
Background:
- Traditional analysis of screening results involves separate evaluation of ROC, predictiveness, and enrichment curves and their metrics.
- Calculating partial metrics for different data fractions is repetitive and lacks integrated visualization.
- Existing tools do not offer simultaneous viewing of partial metrics across different charts.
Purpose of the Study:
- To develop an intuitive web-based application, Screening Explorer, for comprehensive evaluation of screening experiment results.
- To integrate complementary metrics (ROC, predictiveness, enrichment) interactively for a deeper understanding.
- To implement consensus scoring methods for evaluating combined enrichment strategies.
Main Methods:
- Developed a web-based application, Screening Explorer.
- Integrated interactive visualization of ROC, predictiveness, and enrichment curves and their metrics.
- Implemented consensus scoring based on score normalization, standardization (z-scores), and compound ranking.
Main Results:
- Screening Explorer provides an intuitive platform for evaluating screening results by linking complementary metrics.
- The tool enables simultaneous viewing and comparison of partial metrics across different charts.
- Consensus scoring methods were implemented to assess combined enrichment strategies.
Conclusions:
- Screening Explorer simplifies the analysis of virtual and experimental screening results.
- The application facilitates a deeper understanding of screening data through interactive metric linkage.
- This tool enhances the evaluation process in drug discovery and development.
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