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A variant reference data set for the Africanized honeybee, Apis mellifera
Samir M Kadri1, Brock A Harpur2, Ricardo O Orsi1
1Departamento de Produção Animal, Faculdade de Medicina Veterinária e Zootecnia, Univ Estadual Paulista, UNESP, Botucatu, São Paulo 18618681, Brasil.
Scientific Data
|November 9, 2016
Summary
Africanized honeybees (AHBs) in the Americas originated from Brazilian hybridization. This study provides the largest genomic resource for AHBs, enabling new insights into their evolution and defense genetics.
Area of Science:
- Genomics
- Evolutionary Biology
- Entomology
Background:
- Africanized honeybees (AHBs) are a hybrid population of *Apis mellifera* originating in Brazil.
- AHBs have spread throughout the Americas and are a significant concern for beekeeping and research into colony defense.
- Understanding AHB genetics is crucial for managing their impact and studying evolutionary adaptations.
Purpose of the Study:
- To generate a comprehensive genomic resource for Africanized honeybees.
- To facilitate high-resolution studies on AHB population dynamics, evolution, and genetics.
- To aid in the development of tools for AHB identification.
Main Methods:
- High-coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies.
- Utilized Illumina Hi-Seq technology for sequencing (150 bp PE).
- Generated a high-density SNP dataset.
Main Results:
- Identified 3,606,720 Single Nucleotide Polymorphisms (SNPs), with 155,336 located within 11,365 genes.
- Achieved an average read depth of 20.25 reads per site.
- Created the largest genomic dataset currently available for AHBs.
Conclusions:
- The generated SNP dataset is a valuable resource for AHB research.
- Enables advanced studies into the population genetics and evolutionary history of AHBs.
- Supports the development of molecular tools for AHB identification and management.

