Cedratvirus, a Double-Cork Structured Giant Virus, is a Distant Relative of Pithoviruses

Julien Andreani1, Sarah Aherfi2,3, Jacques Yaacoub Bou Khalil4

  • 1Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63 CNRS 7278 IRD 198 INSERM U1095, Facultés de Médecine et de Pharmacie, 13385 cedex 05 Marseille, France. miaguiabidou@gmail.com.

Viruses
|November 10, 2016
PubMed

Insights

Giant viruses, like the newly discovered Cedratvirus, are abundant in the environment. Cedratvirus is closely related to pithoviruses, challenging current giant virus family classifications.

Area of Science:

  • Virology
  • Microbiology
  • Genomics

Background:

  • Giant viruses, including Acanthamoeba polyphaga mimivirus, represent a significant, understudied domain of viral diversity.
  • These viruses are found globally in diverse environmental samples.
  • Morphological and genomic characteristics are key for giant virus classification.

Purpose of the Study:

  • To report the isolation and draft genome sequencing of Cedratvirus, a novel giant amoebal virus.
  • To characterize the morphological and genomic features of Cedratvirus.
  • To investigate the phylogenetic relationship of Cedratvirus with other giant viruses.

Main Methods:

  • Isolation of Cedratvirus from an Algerian environmental sample in Acanthamoeba castellanii.
  • Ovoid particle morphology observation, noting unique cork-like structures at both ends.
  • Draft genome sequencing and comparative genomic analysis with known giant viruses, particularly pithoviruses.

Main Results:

  • Cedratvirus was isolated and its draft genome sequenced (589,068 base pairs).
  • Morphologically, Cedratvirus resembles Pithovirus sibericum but possesses distinct dual terminal "corks".
  • Genomic analysis shows Cedratvirus is a close relative of pithoviruses, sharing a core genome, yet only 21% of its genes have direct counterparts.

Conclusions:

  • Cedratvirus represents a new lineage within giant amoebal viruses.
  • Its genomic and morphological distinctiveness suggests a potential new family or subfamily within the proposed Pithoviridae.
  • Further research is needed to refine the classification of giant viruses and understand Cedratvirus's evolutionary position.

Related Concept Videos

Viral Structure00:56

Viral Structure

Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
75.5K
Introduction to Virus01:28

Introduction to Virus

Viruses are unique biological entities that blur the boundary between living and non-living systems. Although they lack cellular structure and metabolic processes, they can exhibit characteristics of life when infecting a host. Their defining feature is a nucleic acid core, composed of either DNA or RNA, encapsulated within a protein coat called a capsid. This simple structure allows them to invade host cells and use their machinery for replication efficiently.Viral Structure and...
2.3K
Size and Structure of Viral Genomes01:26

Size and Structure of Viral Genomes

Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
978
Subviral Agents01:29

Subviral Agents

Subviral agents are infectious entities that resemble viruses but lack one or more viral components, such as a capsid or essential replication machinery. These agents include viroids, prions, and satellites, each possessing distinct structural and functional characteristics that influence their mode of infection and replication.Viroids are the simplest subviral agents, consisting of circular, single-stranded RNA molecules without a protein coat. They exclusively infect plants, relying entirely...
708
Retrovirus Life Cycles01:10

Retrovirus Life Cycles

Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
50.2K
Viruses of Archaea01:29

Viruses of Archaea

Archaeal viruses play a crucial role in the ecosystems of extremophilic archaea, particularly those belonging to the phyla Euryarchaeota and Crenarchaeota. By shaping host evolution and facilitating gene transfer, these viruses influence microbial communities and contribute to genetic diversity in extreme environments. The archaea they infect thrive in acidic hot springs and hydrothermal vents characterized by high temperatures and low pH. Archaeal viruses exhibit remarkable structural...
625