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Published on: July 27, 2021
Cedratvirus, a Double-Cork Structured Giant Virus, is a Distant Relative of Pithoviruses
Julien Andreani1, Sarah Aherfi2,3, Jacques Yaacoub Bou Khalil4
1Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63 CNRS 7278 IRD 198 INSERM U1095, Facultés de Médecine et de Pharmacie, 13385 cedex 05 Marseille, France. miaguiabidou@gmail.com.
Abstract:
Most viruses are known for the ability to cause symptomatic diseases in humans and other animals. The discovery of Acanthamoeba polyphaga mimivirus and other giant amoebal viruses revealed a considerable and previously unknown area of uncharacterized viral particles. Giant viruses have been isolated from various environmental samples collected from very distant geographic places, revealing a ubiquitous distribution. Their morphological and genomic features are fundamental elements for classifying them. Herein, we report the isolation and draft genome of Cedratvirus, a new amoebal giant virus isolated in Acanthamoeba castellanii, from an Algerian environmental sample. The viral particles are ovoid-shaped, resembling Pithovirus sibericum, but differing notably in the presence of two corks at each extremity of the virion. The draft genome of Cedratvirus-589,068 base pairs in length-is a close relative of the two previously described pithoviruses, sharing 104 and 113 genes with P. sibericum and Pithovirus massiliensis genomes, respectively. Interestingly, analysis of these viruses' core genome reveals that only 21% of Cedratvirus genes are involved in best reciprocal hits with the two pithoviruses. Phylogeny reconstructions and comparative genomics indicate that Cedratvirus is most closely related to pithoviruses, and questions their membership in an enlarged putative Pithoviridae family.
Insights
Giant viruses, like the newly discovered Cedratvirus, are abundant in the environment. Cedratvirus is closely related to pithoviruses, challenging current giant virus family classifications.
Area of Science:
- Virology
- Microbiology
- Genomics
Background:
- Giant viruses, including Acanthamoeba polyphaga mimivirus, represent a significant, understudied domain of viral diversity.
- These viruses are found globally in diverse environmental samples.
- Morphological and genomic characteristics are key for giant virus classification.
Purpose of the Study:
- To report the isolation and draft genome sequencing of Cedratvirus, a novel giant amoebal virus.
- To characterize the morphological and genomic features of Cedratvirus.
- To investigate the phylogenetic relationship of Cedratvirus with other giant viruses.
Main Methods:
- Isolation of Cedratvirus from an Algerian environmental sample in Acanthamoeba castellanii.
- Ovoid particle morphology observation, noting unique cork-like structures at both ends.
- Draft genome sequencing and comparative genomic analysis with known giant viruses, particularly pithoviruses.
Main Results:
- Cedratvirus was isolated and its draft genome sequenced (589,068 base pairs).
- Morphologically, Cedratvirus resembles Pithovirus sibericum but possesses distinct dual terminal "corks".
- Genomic analysis shows Cedratvirus is a close relative of pithoviruses, sharing a core genome, yet only 21% of its genes have direct counterparts.
Conclusions:
- Cedratvirus represents a new lineage within giant amoebal viruses.
- Its genomic and morphological distinctiveness suggests a potential new family or subfamily within the proposed Pithoviridae.
- Further research is needed to refine the classification of giant viruses and understand Cedratvirus's evolutionary position.
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