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A Pro----Leu substitution in codon 369 of the alpha-1-antitrypsin deficiency variant PI MHeerlen
M H Hofker1, T Nukiwa, H M van Paassen
1Department of Human Genetics, Sylvius Laboratories, State University of Leiden, The Netherlands.
Abstract:
The molecular defect has been elucidated in the alpha-1-antitrypsin (PI) gene of a patient with a serum level of only 5 mg/100 ml and a PI M-like phenotype, designated PI MHeerlen. The restriction fragment patterns obtained by probes covering the whole gene and flanking sequences were normal, suggesting no major rearrangements. The nucleotide sequence of the exons, intron/exon junctions, and a part of the promoter region is similar to that of a PI M1(Ala213) gene except for an C----T mutation in codon 369, causing a Pro----Leu substitution. Haplotype analysis and oligonucleotide hybridization studies demonstrated the homozygous state of the mutation in the index case. It is most likely that the Pro369----Leu substitution is responsible for the low serum alpha-1-antitrypsin concentration of the patient because this mutation is solely confined to the PI MHeerlen allele and no other relevant mutations could be revealed. As proline is important for the secondary and tertiary structure of proteins, the mutation may cause an abnormal processing of the nascent polypeptide. The same mutation was observed in two unrelated subjects known to carry a PI allele giving a low serum alpha-1-antitrypsin level.
Insights
A novel mutation in the alpha-1-antitrypsin (PI) gene, Pro369Leu, was identified in a patient with severely low serum PI levels. This genetic defect likely impairs protein processing, leading to reduced circulating PI concentrations.
Area of Science:
- Genetics
- Molecular Biology
- Biochemistry
Background:
- Alpha-1-antitrypsin (PI) deficiency is a genetic disorder associated with low serum PI levels.
- Identifying the molecular basis of PI deficiency is crucial for understanding disease mechanisms.
Purpose of the Study:
- To elucidate the molecular defect in the alpha-1-antitrypsin (PI) gene of a patient with extremely low serum PI levels and a PI M-like phenotype.
Main Methods:
- Restriction fragment analysis to detect major gene rearrangements.
- Nucleotide sequencing of exons, intron/exon junctions, and promoter regions.
- Haplotype analysis and oligonucleotide hybridization to confirm homozygous mutation.
Main Results:
- No major rearrangements were found in the PI gene.
- A C-to-T mutation in codon 369, resulting in a Pro369Leu substitution, was identified.
- This mutation was homozygous in the patient and present in two other unrelated individuals with low PI levels.
Conclusions:
- The Pro369Leu substitution in the PI gene is the likely cause of the patient's low serum PI concentration.
- This mutation may lead to abnormal processing of the alpha-1-antitrypsin protein.
- The identified mutation represents a novel genetic cause of PI deficiency.
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