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Updated: Mar 12, 2026

Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Mitochondrial genotyping of an endangered bitterling Acheilognathus typus (Cyprinidae)
Kenji Saitoh1, Kentaro Shindo2, Yasufumi Fujimoto3
1National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, Fukuura 2-12-4, Kanazawa, Yokohama 236-8648, Japan.
Abstract:
Genotyping of endangered species is helpful for establishing and evaluating conservation strategies. Mitochondrial sequence data was analyzed from 541 individuals of a critically endangered fish, Acheilognathus typus from present-day range-wide localities to re-evaluate an in-progress restoration program around Lake Izunuma-Uchinuma, Miyagi, Japan. Acheilognathus typus showed low sequence diversity with only eight haplotypes and π and ĥ values of 0.59129 and 0.00118 respectively. Genetic data suggests Acheilognathus typus is adapted to pulsed environments and prone to population flush and crash. Genotyping of populations in introduced localities revealed that their source is not from nearby localities.
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