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Metabolism of Chemolithotrophs01:15

Metabolism of Chemolithotrophs

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Chemolithotrophs are microorganisms that obtain energy by oxidizing inorganic molecules such as hydrogen gas (H₂), ammonia (NH₃), reduced sulfur compounds (H₂S, S²⁻), and ferrous iron (Fe²⁺). Unlike heterotrophic organisms that rely on organic carbon, chemolithotrophs transfer electrons from these inorganic donors to the electron transport chain (ETC), generating a proton motive force (PMF) that drives ATP synthesis through oxidative phosphorylation.
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Overview of Nitrogen Metabolism01:20

Overview of Nitrogen Metabolism

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Nitrogen is a very important element for life because it is a major constituent of proteins and nucleic acids. It is a macronutrient, and in nature, it is recycled from organic compounds and stored in the form of  ammonia, ammonium ions, nitrate, nitrite, or  nitrogen gas by many metabolic processes. Many of these metabolic processes are carried out only by prokaryotes.
The largest pool of nitrogen available in the terrestrial ecosystem is gaseous nitrogen (N2) from the air, but this...
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Inorganic Nitrogen Assimilation01:22

Inorganic Nitrogen Assimilation

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Nitrogen is an essential element in biological systems, forming a crucial component of proteins, nucleic acids, and other cellular constituents. Many bacteria and archaea acquire nitrogen in the form of nitrate (NO₃⁻) or ammonia (NH₃), which are then assimilated into biomolecules through specific enzymatic pathways.Assimilatory Nitrate ReductionWhen nitrate enters the cell, it undergoes a two-step reduction process known as assimilatory nitrate reduction. Initially, the enzyme...
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2° Amines to N-Nitrosamines: Reaction with NaNO201:20

2° Amines to N-Nitrosamines: Reaction with NaNO2

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Secondary amines react with nitrous acid to form N-nitrosamines, as depicted in Figure 1. Nitrous acid, a weak and unstable acid, is formed in situ from an aqueous solution of sodium nitrite and strong acids, such as hydrochloric acid or sulfuric acid, in cold conditions. In the presence of an acid, the nitrous acid gets protonated. The subsequent loss of water results in the formation of the electrophile known as nitrosonium ion.
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Microbial Nutrition01:28

Microbial Nutrition

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Organisms exhibit remarkable metabolic diversity, categorized based on how they acquire energy and carbon. These strategies enable survival in various ecological niches and are essential for maintaining energy flow and nutrient cycling within ecosystems.Energy and Carbon SourcesOrganisms are classified as phototrophs or chemotrophs based on energy acquisition. Phototrophs use light as their energy source, while chemotrophs rely on oxidizing chemical compounds. Further differentiation arises...
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Environmental Applications of Microorganisms01:30

Environmental Applications of Microorganisms

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Microorganisms play a pivotal role in maintaining ecosystem balance by recycling essential elements such as carbon, nitrogen, and phosphorus, as well as supporting processes like bioremediation, wastewater treatment, and biofuel production.Microbes in Elemental CyclesIn the carbon cycle, microorganisms decompose organic matter, releasing carbon dioxide via aerobic respiration. This carbon dioxide is subsequently used by photosynthetic organisms to synthesize organic compounds, closing the...
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Related Experiment Video

Updated: Mar 11, 2026

A Novel Bioreactor for High Density Cultivation of Diverse Microbial Communities
08:13

A Novel Bioreactor for High Density Cultivation of Diverse Microbial Communities

Published on: December 25, 2015

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Stream drying drives microbial ammonia oxidation and first-flush nitrate export.

Stephanie N Merbt1, Lorenzo Proia2,3, James I Prosser4

  • 1Eawag-Swiss Federal Institute of Aquatic Science and Technology, Department of Environmental Toxicology, Überlandstrasse 133 Postfach 611, 8600, Dübendorf, Switzerland.

Ecology
|November 19, 2016
PubMed
Summary

Intermittent stream drying increases ammonia oxidation and nitrate in sediments. Dry streambeds act as hotspots, significantly contributing to nitrogen export during rewetting events.

Keywords:
ammonia oxidationammonia oxidizing archaea (AOA)ammonia oxidizing bacteria (AOB)dry riverbedintermittent flownitrificationsemiarid ecosystemsstream

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Area of Science:

  • Environmental Science
  • Microbiology
  • Ecology

Background:

  • Global change is increasing intermittent stream flow, impacting nutrient cycling.
  • Understanding nitrogen cycling during stream drying is crucial for predicting nutrient export.

Purpose of the Study:

  • To investigate the effects of flow cessation and drying on nitrogen cycling in intermittent streams.
  • To quantify ammonia-oxidizing archaea (AOA) and bacteria (AOB) abundance and activity under varying hydrological conditions.

Main Methods:

  • Assessed AOA and AOB abundance and ammonia oxidation activity in stream sediments.
  • Compared microbial communities and nitrogen cycling across running water, isolated pools, and dry streambeds.
  • Analyzed sediment nitrate content in relation to drying severity.

Main Results:

  • AOA were more abundant than AOB, with no significant changes across hydrological conditions.
  • Ammonia oxidation activity and nitrate content increased with stream drying, particularly in surface sediments.
  • Dry streambeds can contribute approximately 50% to nitrate export during first-flush events.

Conclusions:

  • Dry channels of intermittent streams are potential hotspots for ammonia oxidation.
  • Changes in intermittent flow dynamics significantly influence nitrogen cycling and export in river networks.
  • Global change-driven alterations in hydrology will reshape nitrogen dynamics in fluvial systems.