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Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains
Published on: November 30, 2021
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A protocol for pressurized liquid extraction and processing methods to isolate modern and ancient bone cholesterol
Ann O Laffey1, John Krigbaum1, Andrew R Zimmerman2
1Department of Anthropology, University of Florida, 1112 Turlington Hall, Gainesville, FL, 32611, USA.
Rapid Communications in Mass Spectrometry : RCM
|November 19, 2016
Summary
Optimized pressurized liquid extraction (PLE) enhances bone cholesterol analysis for paleodietary studies. This method provides a faster, more efficient alternative for isotopic and ecological research using bone lipids.
Area of Science:
- Paleoecology
- Biogeochemistry
- Analytical Chemistry
Background:
- Bone lipid and stable isotope analyses are crucial for reconstructing past environments and diets.
- Pressurized liquid extraction (PLE) offers a faster, solvent-efficient alternative to traditional lipid extraction methods.
- Standardizing PLE for bone cholesterol extraction is essential for reliable paleodietary insights.
Purpose of the Study:
- To optimize and validate a standardized pressurized liquid extraction (PLE) methodology for bone cholesterol.
- To assess the efficiency and reliability of PLE for extracting cholesterol for compound-specific isotope analysis (CSIA).
- To evaluate the impact of lipid extraction on stable isotope ratios of bone collagen and apatite.
Main Methods:
- Bone samples (modern and archaeological) were subjected to PLE using varying temperatures, solvents, and sample weights.
- Cholesterol yields were quantified to assess PLE efficiency.
- Isotopic signatures (δ13C and δ18O) of extracted cholesterol, collagen, and apatite were analyzed using GC/MS and GC/IRMS.
Main Results:
- Optimal lipid yield was achieved with two PLE cycles at 75 °C using dichloromethane/methanol and 0.25-0.75 g bone samples.
- Saponification and trimethylsilylation significantly increased cholesterol recovery.
- Lipids from purified bone collagen and apatite are suitable for cholesterol CSIA; lipid extraction did not affect collagen δ13C but significantly altered apatite δ18O.
Conclusions:
- The optimized PLE method provides an effective and alternative approach for bone cholesterol extraction.
- This standardized methodology facilitates robust paleodietary and ecological analyses.
- Researchers should consider the impact of lipid extraction on bone apatite isotopic signatures.

