Identification and structure-activity relationship of purine derivatives as novel MTH1 inhibitors

Ashutosh Kumar1, Tatsuro Kawamura2, Makoto Kawatani2

  • 1Structural Bioinformatics Team, RIKEN Center for Life Science Technologies, Yokohama, Kanagawa, Japan.

Insights

Human mutT homolog-1 (MTH1) protein prevents DNA damage from oxidized nucleotides. This study details purine-based MTH1 inhibitors, revealing MTH1

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Cancer Research

Background:

  • The human mutT homolog-1 (MTH1) protein hydrolyzes oxidized nucleotides, preventing their incorporation into DNA during replication.
  • MTH1's role in cancer cell survival under oxidative stress has been proposed as a therapeutic target.
  • Recent evidence challenges the direct anti-cancer effects of MTH1 inhibitors, suggesting off-target mechanisms.

Purpose of the Study:

  • To detail the identification process for novel purine-based MTH1 inhibitors.
  • To investigate the structure-activity relationships of these inhibitors.
  • To provide insights into the binding modes of MTH1 inhibitors through molecular docking.

Main Methods:

  • Identification and synthesis of purine-based compounds targeting MTH1.
  • Determination of inhibitor potency, including submicromolar range compounds.
  • Structure-activity relationship analysis and molecular docking for binding mode prediction.

Main Results:

  • Several new purine-based MTH1 inhibitors with submicromolar potency were identified.
  • Detailed structure-activity relationships were established for the identified compounds.
  • Molecular docking provided predictive insights into the binding modes of these inhibitors.

Conclusions:

  • The study successfully identified novel purine-based MTH1 inhibitors with significant potency.
  • Structure-activity relationship and molecular docking analyses offer a foundation for developing more effective MTH1 inhibitors.
  • These findings contribute to understanding MTH1 inhibition strategies in cancer research.

Related Concept Videos

Adrenergic Agonists: Chemistry and Structure-Activity Relationship01:16

Adrenergic Agonists: Chemistry and Structure-Activity Relationship

Adrenergic agonists' structure-activity relationship (SAR) determines their selectivity and efficacy. These agonists comprise a phenylethylamine moiety with an aromatic ring and an ethylamine side chain.
Aromatic ring substitutions: Substituting the aromatic ring with –OH groups at positions 3 and 4 yields catecholamines (e.g., epinephrine), which have a high affinity for adrenoceptors. Hydrogen bonding between –OH groups and receptors enhances adrenergic activity.
Separation of...
4.0K
Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase01:27

Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase

Phase II biotransformation reactions are essential for detoxifying and eliminating xenobiotics, including many pharmaceutical compounds. These reactions typically involve conjugation, the covalent attachment of polar endogenous groups such as glucuronic acid, sulfate, methyl, or acetyl moieties to functional groups introduced during Phase I metabolism. The resulting conjugates are more water-soluble, enabling efficient renal or biliary excretion.The major classes of Phase II enzymes include...
55
Biosynthesis of Nucleic Acids01:28

Biosynthesis of Nucleic Acids

Nucleic acid biosynthesis is a fundamental biochemical process that produces the purine and pyrimidine nucleotides essential for DNA and RNA synthesis. This pathway maintains a balanced nucleotide pool, preventing imbalances that could jeopardize genetic integrity and cellular function. Given the crucial role of nucleotides, their synthesis is tightly regulated to ensure proper cellular homeostasis.Purine BiosynthesisThe biosynthesis of purine nucleotides begins with ribose-5-phosphate, a...
1.4K
Structure-Activity Relationships and Drug Design01:28

Structure-Activity Relationships and Drug Design

Drug design is a dynamic field that involves discovering and developing new medications based on specific biological targets. This process heavily relies on structure-activity relationships (SAR) and quantitative structure-activity relationships (QSAR) to guide the design and optimization of efficient drugs.
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
1.9K
Cholinergic Antagonists: Chemistry and Structure-Activity Relationship01:29

Cholinergic Antagonists: Chemistry and Structure-Activity Relationship

Cholinergic antagonists bind to cholinergic receptors and limit the effects of acetylcholine and other cholinergic agonists. Based on the specific cholinergic receptor affinity, these antagonists are classified as muscarinic or nicotinic. Anticholinergics interrupt parasympathetic innervations while sympathetic innervations remain uninterrupted. Muscarinic antagonists are also called 'muscarinic antagonists', 'antimuscarinics', or 'parasympatholytics'. Nicotinic...
2.9K
Basicity of Heterocyclic Aromatic Amines01:25

Basicity of Heterocyclic Aromatic Amines

Heterocyclic amines, where the N atom is a part of an alicyclic system, are similar in basicity to alkylamines. Interestingly, the heterocyclic amine having a nitrogen atom as part of an aromatic ring has much less basicity than its corresponding alicyclic counterpart. For this reason, as presented in Figure 1, piperidine (pKb = 2.8) is significantly more basic than pyridine (pKb = 8.8).
7.1K