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Updated: Mar 11, 2026

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Identification and structure-activity relationship of purine derivatives as novel MTH1 inhibitors
Ashutosh Kumar1, Tatsuro Kawamura2, Makoto Kawatani2
1Structural Bioinformatics Team, RIKEN Center for Life Science Technologies, Yokohama, Kanagawa, Japan.
Abstract:
The human mutT homolog-1 (MTH1) protein prevents the incorporation of oxidized nucleotides such as 2-OH-dATP and 8-oxo-dGTP during DNA replication by hydrolyzing them into their corresponding monophosphates. It was found previously that cancer cells could tolerate oxidative stress due to this enzymatic activity of MTH1 and its inhibition could be a promising approach to treat several types of cancer. This finding has been challenged recently with increasing line of evidence suggesting that the cancer cell-killing effects of MTH1 inhibitors may be related to their engagement of off-targets. We have previously reported a few purine-based MTH1 inhibitors that enabled us to elucidate the dispensability of MTH1 in cancer cell survival. Here, we provide a detailed process of the identification of purine-based MTH1 inhibitors. Several new compounds with potency in the submicromolar range are disclosed. Furthermore, the structure-activity relationship and associated binding mode prediction using molecular docking have provided insights for the development of highly potent MTH1 inhibitors.
Insights
Human mutT homolog-1 (MTH1) protein prevents DNA damage from oxidized nucleotides. This study details purine-based MTH1 inhibitors, revealing MTH1
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- The human mutT homolog-1 (MTH1) protein hydrolyzes oxidized nucleotides, preventing their incorporation into DNA during replication.
- MTH1's role in cancer cell survival under oxidative stress has been proposed as a therapeutic target.
- Recent evidence challenges the direct anti-cancer effects of MTH1 inhibitors, suggesting off-target mechanisms.
Purpose of the Study:
- To detail the identification process for novel purine-based MTH1 inhibitors.
- To investigate the structure-activity relationships of these inhibitors.
- To provide insights into the binding modes of MTH1 inhibitors through molecular docking.
Main Methods:
- Identification and synthesis of purine-based compounds targeting MTH1.
- Determination of inhibitor potency, including submicromolar range compounds.
- Structure-activity relationship analysis and molecular docking for binding mode prediction.
Main Results:
- Several new purine-based MTH1 inhibitors with submicromolar potency were identified.
- Detailed structure-activity relationships were established for the identified compounds.
- Molecular docking provided predictive insights into the binding modes of these inhibitors.
Conclusions:
- The study successfully identified novel purine-based MTH1 inhibitors with significant potency.
- Structure-activity relationship and molecular docking analyses offer a foundation for developing more effective MTH1 inhibitors.
- These findings contribute to understanding MTH1 inhibition strategies in cancer research.
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