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An In Vitro 3D Model and Computational Pipeline to Quantify the Vasculogenic Potential of iPSC-Derived Endothelial Progenitors
Published on: May 13, 2019
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3D hybrid modelling of vascular network formation
Holger Perfahl1, Barry D Hughes2, Tomás Alarcón3
1Center Systems Biology, University of Stuttgart, Stuttgart, Germany.
Journal of Theoretical Biology
|November 29, 2016
Summary
We created a computational model simulating blood vessel formation (vasculogenesis) from endothelial progenitor cells. This agent-based model accurately reproduces key features of vascular network development and morphology.
Area of Science:
- Biophysics
- Developmental Biology
- Computational Biology
Background:
- Vasculogenesis, the de novo formation of blood vessels, is crucial for development.
- Endothelial progenitor cells form complex vascular networks.
- Understanding the biomechanical factors driving vasculogenesis is essential.
Purpose of the Study:
- To develop an agent-based model of vasculogenesis.
- To investigate the role of mechanical forces and cell behaviors in vascular network formation.
- To simulate and analyze the key qualitative features of de novo blood vessel development.
Main Methods:
- An off-lattice, agent-based model simulating endothelial cells as elastic spheres.
- Distinguishing between vessel elements and tip cells with different behaviors.
- Incorporating mechanical forces, chemotaxis, persistence, and proliferation dynamics.
- Analyzing parameter sensitivity to network size and morphology.
Main Results:
- The model successfully reproduces key qualitative features of vasculogenesis.
- Tip cell chemotaxis influences network directionality.
- Sprouting probability and cell proliferation rates affect network branching and density.
- Glyphs were developed to visualize network properties over time and parameter variations.
Conclusions:
- The biomechanical hybrid model generates vascular networks qualitatively similar to experimental observations.
- Model parameters like chemotactic sensitivity and mechanical stretch influence network morphology.
- The model provides a framework for understanding vasculogenesis and potentially discriminating between normal and tumor vasculature.

