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Gene silencing of Nox4 by CpG island methylation during hepatocarcinogenesis in rats
Guadalupe S López-Álvarez1, Tomasz K Wojdacz2, Claudia M García-Cuellar3
1Departamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México.
Abstract:
The association between the downregulation of genes and DNA methylation in their CpG islands has been extensively studied as a mechanism that favors carcinogenesis. The objective of this study was to analyze the methylation of a set of genes selected based on their microarray expression profiles during the process of hepatocarcinogenesis. Rats were euthanized at: 24 h, 7, 11, 16 and 30 days and 5, 9, 12 and 18 months post-treatment. We evaluated the methylation status in the CpG islands of four deregulated genes (Casp3, Cldn1, Pex11a and Nox4) using methylation-sensitive high-resolution melting technology for the samples obtained from different stages of hepatocarcinogenesis. We did not observe methylation in Casp3, Cldn1 or Pex11a. However, Nox4 exhibited altered methylation patterns, reaching a maximum of 10%, even during the early stages of hepatocarcinogenesis. We observed downregulation of mRNA and protein of Nox4 (97.5% and 40%, respectively) after the first carcinogenic stimulus relative to the untreated samples. Our results suggest that Nox4 downregulation is associated with DNA methylation of the CpG island in its promoter. We propose that methylation is a mechanism that can silence the expression of Nox4, which could contribute to the acquisition of neoplastic characteristics during hepatocarcinogenesis in rats.
Insights
DNA methylation is linked to gene silencing in cancer. This study found altered DNA methylation in the Nox4 gene promoter during rat hepatocarcinogenesis, suggesting a role in cancer development.
Area of Science:
- Hepatocarcinogenesis research
- Epigenetics and cancer mechanisms
- Gene regulation in cancer development
Background:
- Gene downregulation and DNA methylation in CpG islands are known mechanisms promoting cancer.
- Understanding these epigenetic changes is crucial for identifying cancer drivers.
Purpose of the Study:
- To investigate DNA methylation patterns of specific genes during rat hepatocarcinogenesis.
- To correlate gene expression changes with methylation status in deregulated genes.
Main Methods:
- Utilized microarray expression profiles to select candidate genes.
- Employed methylation-sensitive high-resolution melting technology to assess CpG island methylation.
- Analyzed samples from various time points post-carcinogenic stimulus in rats.
Main Results:
- No significant methylation was observed in Casp3, Cldn1, or Pex11a genes.
- Nox4 gene displayed altered methylation patterns, reaching up to 10% even in early hepatocarcinogenesis stages.
- Downregulation of Nox4 mRNA (97.5%) and protein (40%) was observed following the initial carcinogenic stimulus.
Conclusions:
- Nox4 gene downregulation is associated with DNA methylation in its promoter's CpG island.
- DNA methylation may act as a mechanism to silence Nox4 expression.
- Silencing of Nox4 could contribute to neoplastic progression during rat hepatocarcinogenesis.
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