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Updated: Mar 11, 2026

Bioprospecting of Extremophilic Microorganisms to Address Environmental Pollution
Published on: December 30, 2021
Deinococcus ruber sp. nov., a radiation-resistant bacterium isolated from soil
Eun Bit Kim1, Myung Suk Kang2, Eun Sun Joo1
1Department of Bio & Environmental Technology, College of Natural Science, Seoul Women's University, Seoul 139-774, Republic of Korea.
Two new bacterial strains, Deinococcus ruber sp. nov., were discovered in South Korean garden soil. These radiation-resistant bacteria exhibit unique genetic and chemotaxonomic traits, establishing them as a novel species within the Deinococcus genus.
Area of Science:
- Microbiology
- Bacterial Taxonomy
- Radiation Biology
Background:
- Isolation of novel bacterial strains from environmental sources is crucial for understanding microbial diversity.
- Certain bacterial species exhibit remarkable resistance to radiation, offering insights into DNA repair mechanisms and potential biotechnological applications.
Purpose of the Study:
- To taxonomically characterize two gamma- and UVC-resistant bacterial strains, JSH3-1T and 9-2-2, isolated from garden soil.
- To determine if these strains represent a new species within the Deinococcus genus based on polyphasic taxonomic analysis.
Main Methods:
- Polyphasic taxonomic study including 16S rRNA gene sequencing, DNA-DNA reassociation, chemotaxonomic analysis (respiratory quinones, fatty acids, polar lipids), and determination of DNA G+C content.
- Phylogenetic analysis to ascertain evolutionary relationships with known Deinococcus species.
Main Results:
- Strains JSH3-1T and 9-2-2 are Gram-positive, aerobic, non-motile, spherical bacteria.
- Phylogenetic analysis showed highest 16S rRNA gene sequence similarity (94.7-94.9%) to Deinococcus radiomollis.
- High DNA reassociation (81%) between the two strains and low reassociation (<25%) with other Deinococcus species, coupled with typical Deinococcus chemotaxonomic features, supported their distinctiveness.
- DNA G+C content was determined to be 62.0-61.9 mol%.
Conclusions:
- Strains JSH3-1T and 9-2-2 are phenotypically, genotypically, and phylogenetically distinct from previously described species.
- The proposed name Deinococcus ruber sp. nov. is introduced for these two novel strains, expanding the known diversity of the Deinococcus genus.
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