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Updated: Mar 11, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Plasmid-mediated quinolone resistance determinants among Gram-negative bacteraemia isolates: a hidden threat
Athanasios Margaritis1, Irene Galani2,1, Marianthi Chatzikonstantinou1
14th Department of Internal Medicine, Infectious Diseases Laboratory, Molecular Biology Section, National and Kapodistrian University of Athens, School of Medicine, Athens, Greece.
Purpose:
The aim of the study was to investigate the prevalence of plasmid-mediated quinolone resistance (PMQR) genes in an unselected collection of bloodstream isolates recovered over an 18-month period in a laboratory affiliated to a university hospital in Athens, Greece, and to assess their impact on the in vitro activity of ciprofloxacin and levofloxacin.
Methods:
Eight PMQR genes were screened by PCR and sequencing. All PMQR-positive isolates were submitted to isoelectric focusing for β-lactamase detection, conjugation or transformation, time-kill assays, mutant prevention concentrationand inoculum effect evaluation. PCR and sequencing of gyrA and parC were performed for detection of chromosomal mutations.
Results:
Among 96 Gram-negative isolates, 7 (7.3 %) carried one or more PMQR genes. qnrS1 was the most prevalent (5.2 %), followed by aac(6')-Ib-cr (4.2 %) and their combination (2 %). Cloning was successful for three isolates. The presence of a single PMQR determinant without any target modification was not associated with quinolone resistance with one exception, Stenotrophomonasmaltophilia carrying qnrS1, which was resistant to norfloxacin and ciprofloxacin, but in this isolate, additional mechanisms of quinolone resistance cannot be excluded. All PMQR-positive isolates showed a significant inoculum effect. The mutant prevention concentrations of ciprofloxacin against the quinolone-susceptible clinical isolates ranged from 0.38 to 32 mg l-1 and those of levofloxacin from 1 to 32 mg l-1.
Conclusions:
PMQRs compromised the bactericidal activity of ciprofloxacin and levofloxacin when expressed in Enterobactercloacae, S. maltophilia or Klebsiellapneumoniae and when more than one co-existed. PMQR determinants represent an unrecognized threat, capable to compromise the in vitro activity of quinolones if expressed in a favourable genetic environment and to favour selection of resistant mutants by widening the mutant selection window of these agents.
Insights
Plasmid-mediated quinolone resistance (PMQR) genes were found in 7.3% of Gram-negative bloodstream isolates. Co-existing PMQR genes significantly reduced the effectiveness of ciprofloxacin and levofloxacin.
Area of Science:
- Medical Microbiology
- Antimicrobial Resistance
- Molecular Biology
Background:
- Quinolone antibiotics are crucial for treating bacterial infections.
- Emergence of antimicrobial resistance, particularly plasmid-mediated quinolone resistance (PMQR), poses a significant threat to public health.
- Understanding the prevalence and impact of PMQR genes is essential for effective antimicrobial stewardship.
Purpose of the Study:
- To determine the prevalence of eight PMQR genes in bloodstream isolates from Athens, Greece.
- To assess the impact of PMQR genes on the in vitro activity of ciprofloxacin and levofloxacin.
- To investigate the genetic mechanisms underlying quinolone resistance in these isolates.
Main Methods:
- Screening of 96 Gram-negative bloodstream isolates for eight PMQR genes using PCR and sequencing.
- Phenotypic and genotypic analysis of PMQR-positive isolates, including beta-lactamase detection, conjugation/transformation assays, time-kill assays, and mutant prevention concentration determination.
- Detection of chromosomal mutations in gyrA and parC genes.
Main Results:
- Seven (7.3%) isolates carried one or more PMQR genes, with qnrS1 (5.2%) and aac(6')-Ib-cr (4.2%) being the most common.
- The presence of a single PMQR determinant generally did not confer resistance without target modification, except in Stenotrophomonas maltophilia.
- All PMQR-positive isolates exhibited a significant inoculum effect, and co-existence of multiple PMQR genes compromised the bactericidal activity of ciprofloxacin and levofloxacin.
Conclusions:
- PMQR genes can compromise the in vitro activity of ciprofloxacin and levofloxacin, especially when multiple genes co-exist or are expressed in a favorable genetic context.
- PMQR determinants represent an emerging threat that can facilitate the selection of resistant mutants by widening the mutant selection window.
- Effective strategies are needed to monitor and control the spread of PMQR genes to preserve the efficacy of quinolone antibiotics.
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