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Updated: Mar 11, 2026

A Rat Methyl-Seq Platform to Identify Epigenetic Changes Associated with Stress Exposure
Published on: October 24, 2018
Differential crosstalk between global DNA methylation and metabolomics associated with cell type specific stress
Nivedita Chatterjee1, Jisu Yang1, Dahye Yoon2
1School of Environmental Engineering, University of Seoul, 163 Siripdaero, Dongdaemun-gu, Seoul 02504, South Korea.
Abstract:
The present study endeavored to evaluate the comprehensive mechanisms of MWCNT-induced toxicity with particular emphasis on understanding cell specificity in relation to surface functionalization of MWCNT. Following treatment with differentially functionalized (hydroxylation/carboxylation) MWCNT on human bronchial epithelial (BEAS-2B) and human hepatoma (HepG2) cell lines, intracellular uptake, various toxicological end points, global metabolomics profiling and DNA methylation were evaluated. Herein, the comparative in vitro studies ascertained that surface functionalization diminished the toxic potentiality of MWCNT in respect of their pristine counterpart. The surface enhanced Raman scattering with dark-field microscopy attested the intracellular uptake of functionalized-MWCNT, but not the pristine one. The MWCNT's exposure caused alterations in stress responses (oxidative stress, inflammation, profibrosis, DNA damage-repair), differential mode of gene expressions, global metabolomics and DNA methylation status (DNMT3B dependent hypo-methylation in BEAS-2B cells and hyper-methylation in HepG2 cells) in a cell type specific and surface functionalization dependent manner. The alterations in particular metabolites (choline, betaine, succinate etc.) and distinct DNA methylation crosstalk patterns are the possible underlying mechanisms of differential mode of gene expressions and cell type specificity of MWCNT. This study provides preliminary evidence of epigenetic modifications and global metabolomics profiling which might be translated for risk assessment of MWCNT.
Insights
Surface functionalization of multi-walled carbon nanotubes (MWCNT) reduces their toxicity. Functionalized MWCNT showed reduced cellular uptake and toxicity compared to pristine MWCNT, impacting gene expression and DNA methylation differently across cell types.
Area of Science:
- Toxicology
- Nanomaterial Science
- Epigenetics
Background:
- Multi-walled carbon nanotubes (MWCNT) are widely used but their toxicity mechanisms require detailed investigation.
- Cell specificity and the role of surface functionalization in MWCNT toxicity are not fully understood.
Purpose of the Study:
- To elucidate the comprehensive mechanisms of MWCNT-induced toxicity.
- To evaluate the impact of surface functionalization (hydroxylation/carboxylation) on MWCNT toxicity and cell specificity.
- To investigate intracellular uptake, toxicological endpoints, metabolomics, and DNA methylation.
Main Methods:
- In vitro exposure of human bronchial epithelial (BEAS-2B) and human hepatoma (HepG2) cell lines to pristine and functionalized MWCNT.
- Assessment of intracellular uptake using surface-enhanced Raman scattering and dark-field microscopy.
- Evaluation of toxicological endpoints, global metabolomics, and DNA methylation (DNMT3B-dependent).
Main Results:
- Surface functionalization significantly diminished the toxic potential of MWCNT compared to pristine counterparts.
- Functionalized MWCNT demonstrated intracellular uptake, unlike pristine MWCNT.
- MWCNT exposure induced cell-type and surface-functionalization-dependent alterations in stress responses, gene expression, metabolomics, and DNA methylation patterns.
Conclusions:
- Surface functionalization is a key factor in modulating MWCNT toxicity and cellular interactions.
- Differential metabolomic profiles and DNA methylation patterns underlie cell-type specificity and gene expression changes induced by MWCNT.
- Findings provide preliminary evidence for epigenetic modifications and metabolomics in MWCNT risk assessment.
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