A novel splice-site mutation in the ASPM gene underlies autosomal recessive primary microcephaly
Jamil A Hashmi, Khalid M Al-Harbi, Khushnooda Ramzan
1Sulman Basit, Taibah University Madinah-Center for Genetics and, Inherited Diseases Center for Genetics and Inherited Diseases,, Taibah University Madinah, 30001,, Saudi Arabia, Almadinah Almunawarah 30001, Saudi Arabia, T: +966535370209, sbasit.phd@ gmail.com, ORCID ID: 0000-0003-4294-6825.
Background:
Autosomal recessive primary microcephaly (MCPH) is a clinically and genetically heterogeneous disorder. Patients with MCPH exhibit reduced occipito-frontal head circumference and non-progressive intellectual disability. To date, 17 genes have been known as an underlying cause of MCPH in humans. ASPM (abnormal spindle-like, microcephaly associated) is the most commonly mutated MCPH gene.
Objective:
Identify the genetic defect underlying MCPH in a Saudi family.
Design:
A cross-sectional clinical genetic study of a Saudi family.
Setting:
Madinah Maternity and Children Hospital and Centre for Genetics and Inherited Diseases, Taibah University.
Patients And Methods:
A molecular analysis was carried out on DNA samples from 10 individuals of a Saudi family segregating MCPH. DNA was isolated from the peripheral blood of 10 individuals, including 2 patients, and whole exome sequencing was performed using the Nextera Rapid Capture kit and NextSeq500 instrument. VariantStudio was used to filter and prioritize variants.
Main Outcome Measure(S):
Detection of mutation in the ASPM gene in a family segregating autoso- mal recessive primary microcephaly.
Results:
A novel homozygous splice-site variant (c.3742-1G > C) in the ASPM gene was identified. The variant is predicted to have an effect on splicing. Human Splice Finder, an in silico tool, predicted skipping of exon 16 due to this variant.
Conclusion:
Skipping of exon 16 may change the order and number of IQ motifs in the ASPM protein leading to typical MCPH phenotype.
Limitations:
Single family study.
Insights
A novel splice-site mutation in the ASPM gene was found in a Saudi family with primary microcephaly (MCPH). This genetic defect, affecting exon 16 splicing, causes the typical MCPH phenotype.
Area of Science:
- Genetics
- Neuroscience
- Developmental Biology
Background:
- Autosomal recessive primary microcephaly (MCPH) is a heterogeneous disorder characterized by reduced head circumference and intellectual disability.
- ASPM (abnormal spindle-like, microcephaly associated) is the most frequently mutated gene in MCPH.
- Genetic heterogeneity poses challenges in diagnosing MCPH.
Purpose of the Study:
- To identify the specific genetic cause of MCPH in a consanguineous Saudi family.
- To investigate the molecular basis of the disorder within this family.
- To contribute to the understanding of MCPH genetics.
Main Methods:
- Whole exome sequencing was performed on DNA from 10 family members, including two affected individuals.
- Bioinformatic analysis using VariantStudio was employed to filter and prioritize genetic variants.
- In silico tools like Human Splice Finder were used to predict the functional impact of identified variants.
Main Results:
- A novel homozygous splice-site variant (c.3742-1G > C) was identified in the ASPM gene.
- This variant is predicted to cause skipping of exon 16 in the ASPM transcript.
- The identified mutation segregates with the MCPH phenotype in the studied family.
Conclusions:
- The identified ASPM splice-site variant is likely the causative mutation for MCPH in this Saudi family.
- Exon 16 skipping may alter IQ motif structure in the ASPM protein, leading to the observed phenotype.
- Further studies on larger cohorts are needed to confirm these findings and explore genotype-phenotype correlations.
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