A Bystander Mechanism Explains the Specific Phenotype of a Broadly Expressed Misfolded Protein

Lauren Klabonski1, Ji Zha1, Lakshana Senthilkumar1

  • 1Biology Department, Drexel University, Philadelphia, Pennsylvania, United States of America.

Plos Genetics
|December 8, 2016
PubMed

Insights

Misfolded proteins can damage unrelated proteins, causing disease. In C. elegans, a mutant IGF-like protein (DAF-28) disrupts TGF-β protein (DAF-7) biogenesis, leading to specific neuronal dysfunction and developmental defects.

Area of Science:

  • Cellular biology
  • Neuroscience
  • Protein misfolding diseases

Background:

  • Conformational diseases involve misfolded proteins that disrupt cellular proteostasis.
  • The 'bystander' mechanism describes collateral damage to unrelated proteins by misfolded proteins.
  • Understanding how misfolded proteins cause cell-type-specific phenotypes remains a challenge.

Purpose of the Study:

  • To investigate the gain-of-function mechanism of a folding mutation in the C. elegans IGF-like protein DAF-28.
  • To elucidate how broadly expressed mutant proteins cause cell type-selective phenotypes.
  • To identify the specific cellular targets affected by the DAF-28(R37C) mutation.

Main Methods:

  • Utilized a transgenic C. elegans model with a R37C folding mutation in the endogenous DAF-28 gene.
  • Employed functional, fluorescently-tagged proteins to track protein localization and accumulation.
  • Analyzed the impact of the mutation on the biogenesis of unrelated endogenous proteins, specifically DAF-7/TGF-β.
  • Investigated the role of unfolded protein response (UPR) pathways in modulating the observed phenotypes.

Main Results:

  • The DAF-28(R37C) mutation, though broadly expressed, selectively impairs function in the ASI neuron, causing a distinct developmental phenotype.
  • This phenotype results from the disruption of normal biogenesis of the unrelated DAF-7/TGF-β protein.
  • Wild-type DAF-7/TGF-β mislocalizes and accumulates in the proximal axon of ASI neurons in DAF-28(R37C) animals.
  • Activation of UPR branches modulates the phenotype and DAF-7 mislocalization via divergent mechanisms.

Conclusions:

  • The bystander targeting of DAF-7/TGF-β by misfolded DAF-28/IGF explains the ASI neuron-specific gain-of-function phenotype.
  • This finding suggests that bystander misfolding mechanisms may dictate distinct disease phenotypes associated with different folding mutations in conformational diseases.
  • The study highlights the complexity of proteostasis disruption and cell-type specificity in protein misfolding disorders.

Related Concept Videos

Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
20.6K
Export of Misfolded Proteins out of the ER01:32

Export of Misfolded Proteins out of the ER

After folding, the ER assesses the quality of secretory and membrane proteins. The correctly folded proteins are cleared by the calnexin cycle for transport to their final destination, while misfolded proteins are held back in the ER lumen. The ER chaperones attempt to unfold and refold the misfolded proteins but sometimes fail to achieve the correct native conformation. Such terminally misfolded proteins are then exported to the cytosol by ER-associated degradation or ERAD pathway for...
5.4K
The Unfolded Protein Response01:37

The Unfolded Protein Response

The ER is the hub of protein synthesis in a cell. It has robust systems to quality control protein folding and also for degradation of terminally misfolded proteins. Under normal conditions, a small proportion of misfolded proteins that cannot be salvaged need to be transported to the cytoplasm by the ER-associated degradation or ERAD pathways. However, if the ERAD cannot handle the misfolded proteins, the cell activates the unfolded protein response or UPR to adjust the protein folding...
6.7K
Amyloid Fibrils03:03

Amyloid Fibrils

Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
Amyloid deposits were observed as early as 1639 in the liver and the spleen.   In 1854, Rudolph Virchow performed iodine staining,...
12.4K
Regulation of the Unfolded Protein Response01:31

Regulation of the Unfolded Protein Response

Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
3.1K
The Proteasome01:13

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
1.9K