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Updated: Mar 10, 2026

miRNA Expression Analyses in Prostate Cancer Clinical Tissues
Published on: September 8, 2015
Epigenetic disruption of miR-130a promotes prostate cancer by targeting SEC23B and DEPDC1
João Ramalho-Carvalho1, João Barbosa Martins2, Lina Cekaite3
1Cancer Biology and Epigenetics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute of Porto (IPO Porto), Porto, Portugal; Biomedical Sciences Graduate Program, Institute of Biomedical Sciences Abel Salazar - University of Porto (ICBAS-UP), Porto, Portugal.
Abstract:
MicroRNAs (miRNAs) are small, non-coding RNAs that mediate post-transcriptional gene silencing, fine tuning gene expression. In an initial screen, miRNAs were found to be globally down-regulated in prostate cancer (PCa) cell lines and primary tumours. Exposure of PCa cell lines to a demethylating agent, 5-Aza-CdR resulted in an increase in the expression levels of miRNAs in general. Using stringent filtering criteria miR-130a was identified as the most promising candidate and selected for validation analyses in our patient series. Down-regulation of miR-130a was associated with promoter hypermethylation. MiR-130a methylation levels discriminated PCa from non-malignant tissues (AUC = 0.956), and urine samples revealed high specificity for non-invasive detection of patients with PCa (AUC = 0.89). Additionally, repressive histone marks were also found in the promoter of miR-130a. Over-expression of miR-130a in PCa cells reduced cell viability and invasion capability, and increased apoptosis. Putative targets of miR-130a were assessed by microarray expression profiling and DEPD1C and SEC23B were selected for validation. Silencing of both genes resembled the effect of over-expressing miR-130a in PCa cells. Our data indicate that miR-130a is an epigenetically regulated miRNA involved in regulation of key molecular and phenotypic features of prostate carcinogenesis, acting as a tumour suppressor miRNA.
Insights
MicroRNAs (miRNAs) are crucial for gene regulation. Down-regulated miR-130a in prostate cancer (PCa) is linked to epigenetic changes and acts as a tumor suppressor, offering potential for non-invasive detection.
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- MicroRNAs (miRNAs) are small non-coding RNAs regulating gene expression post-transcriptionally.
- Global down-regulation of miRNAs observed in prostate cancer (PCa) cell lines and tumors.
- Demethylating agent treatment increased miRNA expression in PCa cells.
Purpose of the Study:
- To investigate the role of specific miRNAs in prostate cancer pathogenesis.
- To identify and validate candidate miRNAs involved in PCa development.
- To explore the potential of miRNAs as biomarkers for PCa detection.
Main Methods:
- Screening of miRNAs in PCa cell lines and patient samples.
- Analysis of miRNA expression levels and promoter methylation.
- Validation of candidate miRNA targets using gene expression profiling.
- Functional studies involving miRNA over-expression and gene silencing.
Main Results:
- miR-130a was found to be significantly down-regulated in PCa.
- Down-regulation of miR-130a correlated with promoter hypermethylation and repressive histone marks.
- Methylation levels of miR-130a effectively distinguished PCa from non-malignant tissues (AUC=0.956).
- Urine samples showed high specificity for non-invasive PCa detection (AUC=0.89).
- Over-expression of miR-130a suppressed PCa cell viability and invasion, and increased apoptosis.
- DEPD1C and SEC23B were validated as targets of miR-130a.
Conclusions:
- miR-130a functions as a tumor suppressor miRNA in prostate cancer.
- Epigenetic regulation, specifically promoter hypermethylation, contributes to miR-130a down-regulation in PCa.
- miR-130a plays a role in regulating key molecular and phenotypic features of prostate carcinogenesis.
- miR-130a holds promise as a biomarker for non-invasive PCa detection.
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