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Updated: Mar 10, 2026

Single-cell Gene Expression Using Multiplex RT-qPCR to Characterize Heterogeneity of Rare Lymphoid Populations
Published on: January 19, 2017
Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency
Yannick Simoni1, Michael Fehlings1, Henrik N Kløverpris2
1Agency for Science, Technology and Research (A(∗)STAR), Singapore Immunology Network (SIgN), 138648 Singapore.
This study profiles human innate lymphoid cells (ILCs) using mass cytometry, revealing significant heterogeneity. Researchers identified ILC2 and ILC3 subsets and described novel ILC-like NK cells in various tissues.
Area of Science:
- Immunology
- Cell Biology
Background:
- Innate lymphoid cells (ILCs) are crucial for immune responses, but human ILC characterization is limited.
- Technical challenges have historically hindered detailed analysis of ILCs in human tissues.
Purpose of the Study:
- To accurately identify and profile human ILCs across healthy and inflamed tissues.
- To delineate ILC subsets and explore their heterogeneity in different individuals and tissue types.
Main Methods:
- Utilized mass cytometry with extensive surface markers and transcription factors.
- Applied high-dimensional analysis for phenotypic delineation of ILC subsets.
- Assessed ILCs in both healthy and inflamed human tissue samples.
Main Results:
- Clearly delineated ILC2 and ILC3 subsets.
- Identified intra-epithelial ILC1-like cells, a category of NK cells, in mucosal and non-mucosal tissues.
- Revealed previously undescribed phenotypic molecules on human ILCs.
- Demonstrated significant heterogeneity of human ILCs across individuals and tissues.
Conclusions:
- Human ILCs exhibit substantial heterogeneity between individuals and tissues.
- Provides a comprehensive description of ILC heterogeneity in humans.
- Mass cytometry is effective for detailed ILC profiling, including novel cell populations.
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