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Updated: Mar 9, 2026

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D
Justas Dapkunas1, Albertas Timinskas1, Kliment Olechnovic1,2
1Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.
Summary:
The PPI3D web server is focused on searching and analyzing the structural data on protein-protein interactions. Reducing the data redundancy by clustering and analyzing the properties of interaction interfaces using Voronoi tessellation makes this software a highly effective tool for addressing different questions related to protein interactions.
Availability And Implementation:
The server is freely accessible at http://bioinformatics.lt/software/ppi3d/ .
Contact:
ceslovas.venclovas@bti.vu.lt.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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