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Quantitative Mass Spectrometric Profiling of Cancer-cell Proteomes Derived From Liquid and Solid Tumors
Published on: February 27, 2015
Suppression of 19S proteasome subunits marks emergence of an altered cell state in diverse cancers
Peter Tsvetkov1, Ethan Sokol2,3, Dexter Jin2,3
1Whitehead Institute for Biomedical Research, Cambridge, MA 02142; petert@wi.mit.edu.
Abstract:
The use of proteasome inhibitors to target cancer's dependence on altered protein homeostasis has been greatly limited by intrinsic and acquired resistance. Analyzing data from thousands of cancer lines and tumors, we find that those with suppressed expression of one or more 19S proteasome subunits show intrinsic proteasome inhibitor resistance. Moreover, such proteasome subunit suppression is associated with poor outcome in myeloma patients, where proteasome inhibitors are a mainstay of treatment. Beyond conferring resistance to proteasome inhibitors, proteasome subunit suppression also serves as a sentinel of a more global remodeling of the transcriptome. This remodeling produces a distinct gene signature and new vulnerabilities to the proapoptotic drug, ABT-263. This frequent, naturally arising imbalance in 19S regulatory complex composition is achieved through a variety of mechanisms, including DNA methylation, and marks the emergence of a heritably altered and therapeutically relevant state in diverse cancers.
Insights
Suppressed proteasome subunit expression causes cancer drug resistance. This imbalance also creates new vulnerabilities, offering novel therapeutic strategies for diverse cancers.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genomics
Background:
- Cancer cells rely on protein homeostasis, making proteasome inhibitors a key treatment.
- Intrinsic and acquired resistance limit the efficacy of proteasome inhibitors.
- Understanding resistance mechanisms is crucial for improving cancer therapy.
Purpose of the Study:
- To investigate the link between proteasome subunit expression and resistance to proteasome inhibitors.
- To identify novel therapeutic vulnerabilities associated with proteasome dysfunction.
- To characterize the transcriptomic changes accompanying proteasome subunit suppression.
Main Methods:
- Analysis of large-scale cancer cell line and tumor datasets.
- Gene expression profiling and signature analysis.
- Correlation of proteasome subunit levels with patient outcomes and drug response.
Main Results:
- Suppressed expression of 19S proteasome subunits confers intrinsic resistance to proteasome inhibitors.
- Proteasome subunit suppression is linked to poor prognosis in multiple myeloma.
- Transcriptomic remodeling due to proteasome subunit loss creates vulnerabilities to drugs like ABT-263.
Conclusions:
- Imbalances in 19S proteasome regulatory complex composition are a frequent, heritable state in cancer.
- This state confers resistance to proteasome inhibitors and sensitizes cells to other agents.
- Targeting these vulnerabilities offers new therapeutic avenues for resistant cancers.
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