Related Experiment Video
Updated: Mar 9, 2026

Mapping Mammalian 3D Genome Interactions with Micro-C-XL
Published on: November 3, 2023
PanViz: interactive visualization of the structure of functionally annotated pangenomes
Thomas Lin Pedersen1,2, Intawat Nookaew3,4, David Wayne Ussery3,4
1Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, DK-2800 Lyngby, Denmark.
Summary:
PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses.
Availability And Implementation:
PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz . A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator .
Contact:
thomasp85@gmail.com.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
More Related Videos
10:44Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
Published on: December 7, 2021
08:03Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
Related Concept Videos
pV-Diagrams
Evolutionary Relationships through Genome Comparisons
Phylogeny
Phylogenetic Trees
Karyotyping
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes