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Updated: Mar 9, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Genotype-matched treatment for patients with advanced type I epithelial ovarian cancer (EOC)
A Spreafico1, A M Oza1, B A Clarke2
1Department of Medicine, Division of Medical Oncology & Hematology, Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON, Canada.
Background:
Genomic alterations that activate the MAPK signaling pathway frequently occur in Type I Epithelial Ovarian Cancers (EOCs). We evaluated therapeutic response outcomes in patients with type I EOC treated with genotype-matched therapy on clinical trials enrolled in a prospective molecular profiling program.
Material And Methods:
Formalin fixed paraffin embedded tumor tissues were prospectively screened for genomic alterations using MALDI-ToF mass-spectrometry platform or targeted sequencing using the Illumina MiSeq TruSeq Amplicon Cancer Panel. Treatment outcomes on genotype-matched trials were retrospectively reviewed using RECIST version 1.1 and Gynecological Cancer Intergroup CA125 related-response criteria RESULTS: 55 patients with type I EOC underwent molecular profiling, 41 (75%) low grade serous (LGS), 9 (16%) clear cell (CC), and 5 (9%) mucinous (MC) histologies. Thirty-five patients (64%) were found to have ≥1 somatic mutations: 23 KRAS, 6 NRAS, 5 PIK3CA, 2 PTEN, 1 BRAF, 1 AKT, 1 TP53, and 1 CTNNB1. Fifteen patients were subsequently enrolled in genotype-matched phase I or II trials, including 14 patients with KRAS/NRAS mutations treated with MEK inhibitor targeted combinations. Among 14 RECIST evaluable patients, there were 7 partial responses (PR), 7 stable disease (SD) and 1 disease progression (PD). CA125 responses were observed in 10/10 evaluable KRAS/NRAS mutant patients treated with MEK inhibitor combinations CONCLUSIONS: Genotyping and targeted sequencing of Type I EOCs frequently identifies actionable mutations. Matched treatment with MEK-based combination therapy in KRAS and/or NRAS mutant type I EOC patients is an active therapeutic strategy.
Insights
Genomic profiling of Type I Epithelial Ovarian Cancers (EOCs) identified actionable mutations. MEK inhibitor combinations showed therapeutic promise in KRAS/NRAS-mutant EOC patients, indicating an active treatment strategy.
Area of Science:
- Oncology
- Genetics
- Pharmacology
Background:
- Type I Epithelial Ovarian Cancers (EOCs) often exhibit genomic alterations activating the MAPK signaling pathway.
- Evaluating therapeutic responses in Type I EOC patients receiving genotype-matched therapy is crucial.
Purpose of the Study:
- To assess treatment outcomes in Type I EOC patients undergoing genotype-matched therapy.
- To identify actionable mutations and their therapeutic implications in Type I EOC.
Main Methods:
- Prospective molecular profiling of tumor tissues using MALDI-ToF mass spectrometry or targeted sequencing.
- Retrospective review of treatment outcomes on genotype-matched trials using RECIST v1.1 and CA125 criteria.
Main Results:
- Molecular profiling of 55 Type I EOC patients revealed somatic mutations in 64%, including KRAS, NRAS, and PIK3CA.
- Fifteen patients received genotype-matched therapy; 14 with KRAS/NRAS mutations were treated with MEK inhibitor combinations.
- Among evaluable patients, 7 achieved partial response and 7 had stable disease; 10/10 KRAS/NRAS mutant patients showed CA125 response.
Conclusions:
- Genotyping and targeted sequencing of Type I EOCs frequently identify actionable mutations.
- MEK-based combination therapy is an active strategy for KRAS/NRAS-mutant Type I EOC patients.
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