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Updated: Mar 9, 2026

Author Spotlight: Investigating the Motion Dynamics of the Eukaryotic Replisome Components at the Single-Molecule Level
Published on: July 26, 2024
Human RIF1 and protein phosphatase 1 stimulate DNA replication origin licensing but suppress origin activation
Shin-Ichiro Hiraga1, Tony Ly2, Javier Garzón3
1Institute of Medical Sciences, School of Medicine, Medical Sciences & Nutrition, University of Aberdeen, Aberdeen, UK s.hiraga@abdn.ac.uk a.d.donaldson@abdn.ac.uk.
Abstract:
The human RIF1 protein controls DNA replication, but the molecular mechanism is largely unknown. Here, we demonstrate that human RIF1 negatively regulates DNA replication by forming a complex with protein phosphatase 1 (PP1) that limits phosphorylation-mediated activation of the MCM replicative helicase. We identify specific residues on four MCM helicase subunits that show hyperphosphorylation upon RIF1 depletion, with the regulatory N-terminal domain of MCM4 being particularly strongly affected. In addition to this role in limiting origin activation, we discover an unexpected new role for human RIF1-PP1 in mediating efficient origin licensing. Specifically, during the G1 phase of the cell cycle, RIF1-PP1 protects the origin-binding ORC1 protein from untimely phosphorylation and consequent degradation by the proteasome. Depletion of RIF1 or inhibition of PP1 destabilizes ORC1, thereby reducing origin licensing. Consistent with reduced origin licensing, RIF1-depleted cells exhibit increased spacing between active origins. Human RIF1 therefore acts as a PP1-targeting subunit that regulates DNA replication positively by stimulating the origin licensing step, and then negatively by counteracting replication origin activation.
Insights
Human RIF1 protein regulates DNA replication by forming a complex with protein phosphatase 1 (PP1). This complex controls both origin licensing and replication activation, ensuring proper cell cycle progression.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- The molecular mechanisms governing DNA replication in humans are not fully understood.
- The RIF1 protein plays a role in DNA replication, but its precise function remains unclear.
Purpose of the Study:
- To elucidate the molecular mechanism by which human RIF1 regulates DNA replication.
- To investigate the interaction of RIF1 with other proteins involved in DNA replication.
Main Methods:
- The study utilized techniques such as protein complex formation analysis and cell-based assays.
- Specific protein residues and their phosphorylation states were identified upon RIF1 depletion.
- The impact of RIF1 and PP1 on origin recognition complex subunit 1 (ORC1) stability was assessed.
Main Results:
- Human RIF1 forms a complex with protein phosphatase 1 (PP1), which limits the phosphorylation and activation of the MCM replicative helicase.
- RIF1-PP1 complex protects ORC1 from phosphorylation and proteasomal degradation during the G1 phase, promoting origin licensing.
- RIF1 depletion leads to hyperphosphorylation of MCM subunits and destabilization of ORC1, resulting in increased origin spacing.
Conclusions:
- Human RIF1 acts as a dual regulator of DNA replication, positively influencing origin licensing via PP1 and negatively controlling origin activation.
- The RIF1-PP1 complex is crucial for maintaining genomic stability by ensuring proper DNA replication initiation and progression.
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