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Development of Dihydroxyphenyl Sulfonylisoindoline Derivatives as Liver-Targeting Pyruvate Dehydrogenase Kinase
Shih-Chia Tso, Mingliang Lou1,2, Cheng-Yang Wu
1Chemistry Center, National Institute of Biological Science , Beijing 102206, China.
Abstract:
Pyruvate dehydrogenase kinases 1-4 (PDK1-4) negatively control activity of the pyruvate dehydrogenase complex (PDC) and are up-regulated in obesity, diabetes, heart failure, and cancer. We reported earlier two novel pan-PDK inhibitors PS8 [4-((5-hydroxyisoindolin-2-yl)sulfonyl)benzene-1,3-diol] (1) and PS10 [2-((2,4-dihydroxyphenyl)sulfonyl)isoindoline-4,6-diol] (2) that targeted the ATP-binding pocket in PDKs. Here, we developed a new generation of PDK inhibitors by extending the dihydroxyphenyl sulfonylisoindoline scaffold in 1 and 2 to the entrance region of the ATP-binding pocket in PDK2. The lead inhibitor (S)-3-amino-4-(4-((2-((2,4-dihydroxyphenyl)sulfonyl)isoindolin-5-yl)amino)piperidin-1-yl)-4-oxobutanamide (17) shows a ∼8-fold lower IC50 (58 nM) than 2 (456 nM). In the crystal structure, the asparagine moiety in 17 provides additional interactions with Glu-262 from PDK2. Treatment of diet-induced obese mice with 17 resulted in significant liver-specific augmentation of PDC activity, accompanied by improved glucose tolerance and drastically reduced hepatic steatosis. These findings support 17 as a potential glucose-lowering therapeutic targeting liver for obesity and type 2 diabetes.
Insights
A new drug candidate, compound 17, effectively inhibits pyruvate dehydrogenase kinases (PDKs) in the liver. This leads to improved glucose control and reduced fat accumulation in obese mice, offering a potential treatment for type 2 diabetes.
Area of Science:
- Biochemistry
- Metabolic Diseases
- Drug Discovery
Background:
- Pyruvate dehydrogenase kinases (PDK1-4) regulate the pyruvate dehydrogenase complex (PDC) and are implicated in metabolic disorders like obesity and diabetes.
- Previous research identified pan-PDK inhibitors PS8 and PS10 targeting the ATP-binding pocket.
Purpose of the Study:
- To develop a new generation of PDK inhibitors by modifying the scaffold of PS8 and PS10.
- To evaluate the efficacy of the lead inhibitor, compound 17, in preclinical models of obesity and type 2 diabetes.
Main Methods:
- Structure-based drug design was used to extend the inhibitor scaffold towards the PDK2 ATP-binding pocket entrance.
- In vitro biochemical assays determined the IC50 of compound 17 against PDK2.
- X-ray crystallography elucidated the binding mode of compound 17.
- Diet-induced obese mice were treated with compound 17 to assess liver-specific PDC activity, glucose tolerance, and hepatic steatosis.
Main Results:
- Compound 17 demonstrated significantly improved potency (58 nM IC50) compared to PS10 (456 nM).
- The crystal structure revealed additional interactions of compound 17 with PDK2 via its asparagine moiety.
- In vivo studies showed liver-specific increases in PDC activity, enhanced glucose tolerance, and reduced hepatic steatosis in obese mice treated with compound 17.
Conclusions:
- Compound 17 represents a potent, next-generation PDK inhibitor with a promising therapeutic profile.
- Targeting liver PDKs with compound 17 offers a potential strategy for managing obesity and type 2 diabetes.
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