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Enhancer Remodeling during Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacologic Targeting of the P-TEFb
Jon S Zawistowski1, Samantha M Bevill1, Daniel R Goulet1
1Department of Pharmacology, Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill, North Carolina.
Abstract:
Targeting the dysregulated BRAF-MEK-ERK pathway in cancer has increasingly emerged in clinical trial design. Despite clinical responses in specific cancers using inhibitors targeting BRAF and MEK, resistance develops often involving nongenomic adaptive bypass mechanisms. Inhibition of MEK1/2 by trametinib in patients with triple-negative breast cancer (TNBC) induced dramatic transcriptional responses, including upregulation of receptor tyrosine kinases (RTK) comparing tumor samples before and after one week of treatment. In preclinical models, MEK inhibition induced genome-wide enhancer formation involving the seeding of BRD4, MED1, H3K27 acetylation, and p300 that drives transcriptional adaptation. Inhibition of the P-TEFb-associated proteins BRD4 and CBP/p300 arrested enhancer seeding and RTK upregulation. BRD4 bromodomain inhibitors overcame trametinib resistance, producing sustained growth inhibition in cells, xenografts, and syngeneic mouse TNBC models. Pharmacologic targeting of P-TEFb members in conjunction with MEK inhibition by trametinib is an effective strategy to durably inhibit epigenomic remodeling required for adaptive resistance.Significance: Widespread transcriptional adaptation to pharmacologic MEK inhibition was observed in TNBC patient tumors. In preclinical models, MEK inhibition induces dramatic genome-wide modulation of chromatin, in the form of de novo enhancer formation and enhancer remodeling. Pharmacologic targeting of P-TEFb complex members at enhancers is an effective strategy to durably inhibit such adaptation. Cancer Discov; 7(3); 302-21. ©2017 AACR.This article is highlighted in the In This Issue feature, p. 235.
Insights
Targeting the BRAF-MEK-ERK pathway is crucial for cancer treatment. Inhibiting MEK in triple-negative breast cancer (TNBC) triggers resistance, but combining MEK inhibitors with P-TEFb targeting drugs overcomes this by blocking adaptive resistance mechanisms.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Research
Background:
- The BRAF-MEK-ERK pathway is a key target in cancer therapy.
- Resistance to MEK inhibitors, particularly in triple-negative breast cancer (TNBC), often involves adaptive bypass mechanisms.
- Trametinib, a MEK inhibitor, induces significant transcriptional changes in TNBC, including receptor tyrosine kinase (RTK) upregulation.
Purpose of the Study:
- To investigate the mechanisms of resistance to MEK inhibition in TNBC.
- To explore strategies for overcoming MEK inhibitor resistance by targeting adaptive transcriptional responses.
- To evaluate the efficacy of combining MEK inhibitors with P-TEFb complex inhibitors.
Main Methods:
- Analysis of tumor samples from TNBC patients before and after trametinib treatment.
- Preclinical studies in TNBC models to assess genome-wide enhancer formation and chromatin remodeling.
- Inhibition of BRD4 and CBP/p300, components of the P-TEFb complex, to block enhancer seeding.
- Evaluation of BRD4 bromodomain inhibitors in combination with trametinib.
Main Results:
- MEK inhibition by trametinib in TNBC patients induced widespread transcriptional adaptation, including RTK upregulation.
- Preclinical models showed MEK inhibition promoted genome-wide enhancer formation via BRD4, MED1, H3K27 acetylation, and p300.
- Inhibiting BRD4 and CBP/p300 prevented enhancer seeding and RTK upregulation.
- BRD4 bromodomain inhibitors combined with trametinib achieved sustained tumor growth inhibition in TNBC models.
Conclusions:
- Pharmacologic MEK inhibition in TNBC leads to adaptive transcriptional changes and resistance.
- MEK inhibition induces significant chromatin remodeling and enhancer formation.
- Targeting P-TEFb complex members, such as BRD4 and CBP/p300, alongside MEK inhibitors is a promising strategy to overcome adaptive resistance in TNBC.
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