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Analog series-based scaffolds: computational design and exploration of a new type of molecular scaffolds for
Dilyana Dimova1, Dagmar Stumpfe1, Ye Hu1
1Department of Life Science Informatics, B-IT, LIMES Program Unit Chemical Biology & Medicinal Chemistry, Rheinische Friedrich-Wilhelms-Universität, Dahlmannstr. 2, D-53113 Bonn, Germany.
Aim:
Computational design of and systematic search for a new type of molecular scaffolds termed analog series-based scaffolds.
Materials & Methods:
From currently available bioactive compounds, analog series were systematically extracted, key compounds identified and new scaffolds isolated from them.
Results:
Using our computational approach, more than 12,000 scaffolds were extracted from bioactive compounds.
Conclusion:
A new scaffold definition is introduced and a computational methodology developed to systematically identify such scaffolds, yielding a large freely available scaffold knowledge base.
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