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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Combination treatment using DDX3 and PARP inhibitors induces synthetic lethality in BRCA1-proficient breast cancer
Marise R Heerma van Voss1,2, Justin D Brilliant1, Farhad Vesuna1
1Department of Radiology and Radiological Sciences, Johns Hopkins University School of Medicine, 720 Rutland Avenue, Baltimore, MD, 21205, USA.
Abstract:
Triple-negative breast cancers have unfavorable outcomes due to their inherent aggressive behavior and lack of targeted therapies. Breast cancers occurring in BRCA1 mutation carriers are mostly triple-negative and harbor homologous recombination deficiency, sensitizing them to inhibition of a second DNA damage repair pathway by, e.g., PARP inhibitors. Unfortunately, resistance against PARP inhibitors in BRCA1-deficient cancers is common and sensitivity is limited in BRCA1-proficient breast cancers. RK-33, an inhibitor of the RNA helicase DDX3, was previously demonstrated to impede non-homologous end-joining repair of DNA breaks. Consequently, we evaluated DDX3 as a therapeutic target in BRCA pro- and deficient breast cancers and assessed whether DDX3 inhibition could sensitize cells to PARP inhibition. High DDX3 expression was identified by immunohistochemistry in breast cancer samples of 24% of BRCA1 (p = 0.337) and 21% of BRCA2 mutation carriers (p = 0.624), as compared to 30% of sporadic breast cancer samples. The sensitivity to the DDX3 inhibitor RK-33 was similar in BRCA1 pro- and deficient breast cancer cell lines, with IC50 values in the low micromolar range (2.8-6.6 μM). A synergistic interaction was observed for combination treatment with RK-33 and the PARP inhibitor olaparib in BRCA1-proficient breast cancer, with the mean combination index ranging from 0.59 to 0.62. Overall, we conclude that BRCA pro- and deficient breast cancers have a similar dependency upon DDX3. DDX3 inhibition by RK-33 synergizes with PARP inhibitor treatment, especially in breast cancers with a BRCA1-proficient background.
Insights
Triple-negative breast cancers often have poor outcomes. Targeting DDX3 with RK-33 may enhance PARP inhibitor effectiveness, particularly in BRCA1-proficient cancers.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Triple-negative breast cancers (TNBCs) present poor prognoses due to aggressive nature and limited targeted treatments.
- BRCA1-mutated breast cancers are often TNBCs and exhibit homologous recombination deficiency (HRD), making them sensitive to PARP inhibitors.
- Resistance to PARP inhibitors is frequent in BRCA1-deficient cancers, and sensitivity is limited in BRCA1-proficient cancers.
Purpose of the Study:
- To investigate RNA helicase DDX3 as a therapeutic target in BRCA-proficient and deficient breast cancers.
- To determine if DDX3 inhibition can sensitize breast cancer cells to PARP inhibition.
Main Methods:
- Immunohistochemistry was used to assess DDX3 expression in breast cancer samples from BRCA1 and BRCA2 mutation carriers and sporadic cases.
- Cell viability assays were performed to evaluate sensitivity to the DDX3 inhibitor RK-33 in BRCA-proficient and deficient breast cancer cell lines.
- Combination treatments of RK-33 and the PARP inhibitor olaparib were assessed for synergistic effects.
Main Results:
- High DDX3 expression was observed in 24% of BRCA1 carriers, 21% of BRCA2 carriers, and 30% of sporadic breast cancers.
- BRCA-proficient and deficient breast cancer cell lines showed similar sensitivity to RK-33 (IC50 in low micromolar range).
- Combination therapy with RK-33 and olaparib demonstrated synergy in BRCA1-proficient breast cancer cells (mean combination index 0.59-0.62).
Conclusions:
- Breast cancers, regardless of BRCA proficiency, exhibit similar dependency on DDX3.
- DDX3 inhibition via RK-33 synergizes with PARP inhibitor treatment, offering a potential therapeutic strategy, especially for BRCA1-proficient breast cancers.
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