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Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
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Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
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Computational methods in drug discovery.

Sumudu P Leelananda1, Steffen Lindert1

  • 1Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH 43210, USA.

Beilstein Journal of Organic Chemistry
|February 2, 2017
PubMed
Summary
This summary is machine-generated.

Computer-aided drug discovery (CADD) offers a faster, cost-effective approach to developing new therapeutics. This review highlights computational methods and recent successes in accelerating drug development.

Keywords:
ADMELBDDQSARSBDDcomputer-aided drug designdockingfree energyhigh-throughput screeninglead optimizationmachine learningpharmacophorescoringtarget flexibility

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Area of Science:

  • Pharmacology
  • Computational Biology
  • Medicinal Chemistry

Background:

  • Drug discovery and development is a lengthy, costly endeavor.
  • Advancements in genomics, structural biology, and computing power enable computational methods.
  • Computer-aided drug discovery (CADD) is now essential for therapeutic development.

Purpose of the Study:

  • To provide an overview of computational methods in drug discovery.
  • To highlight recent successes and advancements in CADD.
  • To review both structure-based and ligand-based drug discovery approaches.

Main Methods:

  • Review of structure-based drug discovery techniques.
  • Review of ligand-based drug discovery techniques.
  • Discussion of virtual high-throughput screening, protein structure prediction, protein-ligand docking, pharmacophore modeling, and QSAR.

Main Results:

  • Computational methods significantly expedite the drug discovery pipeline.
  • CADD tools reduce the time and expense of research and development.
  • In silico approaches are increasingly vital for pharmaceutical research.

Conclusions:

  • CADD is an indispensable tool in modern therapeutic development.
  • Computational methods, including structure- and ligand-based approaches, are advancing pharmaceutical research.
  • The integration of CADD accelerates the identification and optimization of drug candidates.