Related Experiment Video
Updated: Mar 7, 2026

Efficient Purification and LC-MS/MS-based Assay Development for Ten-Eleven Translocation-2 5-Methylcytosine Dioxygenase
Published on: October 15, 2018
Ab initio molecular dynamics relaxation and intersystem crossing mechanisms of 5-azacytosine
Antonio Carlos Borin1, Sebastian Mai2, Philipp Marquetand2
1Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, NAP-PhotoTech the USP Consortium for Photochemical Technology, Av. Prof. Lineu Prestes 748, 05508-000, São Paulo, SP, Brazil. ancborin@iq.usp.br.
Abstract:
The gas phase relaxation dynamics of photoexcited 5-azacytosine has been investigated by means of SHARC (surface-hopping including arbitrary couplings) molecular dynamics, based on accurate multireference electronic structure computations. Both singlet and triplet states were included in the simulations in order to investigate the different internal conversion and intersystem crossing pathways of this molecule. It was found that after excitation, 5-azacytosine undergoes ultrafast relaxation to the electronic ground state with a time constant of about 1 picosecond. Two important conical intersections have been identified as the funnel responsible for this deactivation mechanism. The very low intersystem crossing yield of 5-azacytosine has been explained by the size of the relevant spin-orbit coupling matrix elements, which are significantly smaller than in related molecules like cytosine or 6-azauracil. This difference is due to the fact that in 5-azacytosine the lowest singlet state is of nNπ* nature, whereas in cytosine and 6-azauracil it is of nOπ* character.
More Related Videos
Related Concept Videos
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Spontaneous and Induced Mutations

