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Updated: Mar 7, 2026

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Establishing a Device for Sleep Deprivation in Mice
Published on: September 22, 2023
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Human and rat gut microbiome composition is maintained following sleep restriction
Shirley L Zhang1,2,3, Lei Bai3, Namni Goel2,4
1Chronobiology Program, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Summary
Sleep restriction may not significantly alter the gut microbiome. Studies in rats and humans show minimal changes in microbial populations, suggesting the gut microbiome is largely resistant to sleep loss.
Area of Science:
- Microbiology
- Sleep Science
- Human Health
Background:
- Modern society faces widespread sleep insufficiency, linked to metabolic, cardiovascular, and neurological diseases.
- Gut microbiome dysbiosis is also associated with these pathologies.
- This study investigates if sleep restriction impacts the gut microbiome, potentially contributing to disease.
Purpose of the Study:
- To examine the effects of sleep restriction on the fecal microbiome in a cross-species model (rats and humans).
- To determine if sleep deprivation perturbs gut microbial composition and richness.
Main Methods:
- Fecal samples from rats and humans undergoing sleep restriction were analyzed.
- 16S ribosomal RNA (rRNA) gene sequencing (V1-V2 hypervariable regions) was used to identify operational taxonomic units (OTUs).
- Microbiome richness and composition were compared between sleep-restricted and control groups.
Main Results:
- In rats, sleep restriction decreased OTU richness but did not alter major microbial populations.
- A single OTU (TM7-3a) was observed to increase with sleep restriction in rats.
- No significant changes in microbiome richness or composition were detected in humans due to sleep restriction.
Conclusions:
- The gut microbiome appears largely resistant to alterations induced by sleep restriction.
- Sleep loss may not be a primary driver of gut dysbiosis in the studied models.
- Further research is needed to fully elucidate the complex relationship between sleep and the gut microbiome.

