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Understanding the mTOR signaling pathway via mathematical modeling
Nurgazy Sulaimanov1,2, Martin Klose3, Hauke Busch3
1Department of Electrical Engineering and Information Technology, Technische Universität Darmstadt, Darmstadt, Germany.
Abstract:
The mechanistic target of rapamycin (mTOR) is a central regulatory pathway that integrates a variety of environmental cues to control cellular growth and homeostasis by intricate molecular feedbacks. In spite of extensive knowledge about its components, the molecular understanding of how these function together in space and time remains poor and there is a need for Systems Biology approaches to perform systematic analyses. In this work, we review the recent progress how the combined efforts of mathematical models and quantitative experiments shed new light on our understanding of the mTOR signaling pathway. In particular, we discuss the modeling concepts applied in mTOR signaling, the role of multiple feedbacks and the crosstalk mechanisms of mTOR with other signaling pathways. We also discuss the contribution of principles from information and network theory that have been successfully applied in dissecting design principles of the mTOR signaling network. We finally propose to classify the mTOR models in terms of the time scale and network complexity, and outline the importance of the classification toward the development of highly comprehensive and predictive models. WIREs Syst Biol Med 2017, 9:e1379. doi: 10.1002/wsbm.1379 For further resources related to this article, please visit the WIREs website.
Insights
Systems Biology approaches, combining mathematical models and quantitative experiments, enhance understanding of the mechanistic target of rapamycin (mTOR) pathway. This review details modeling concepts, feedbacks, and network theories for mTOR signaling.
Area of Science:
- Systems Biology
- Molecular Biology
- Biophysics
Background:
- The mechanistic target of rapamycin (mTOR) pathway integrates environmental signals to regulate cellular growth and homeostasis.
- Despite known components, the spatiotemporal dynamics and integrated function of the mTOR pathway remain poorly understood.
- Systems Biology approaches are needed for systematic analysis of complex signaling networks like mTOR.
Purpose of the Study:
- To review recent advancements in understanding the mTOR signaling pathway through mathematical modeling and quantitative experiments.
- To discuss modeling concepts, feedback mechanisms, and crosstalk within the mTOR network.
- To explore the application of information and network theory to mTOR signaling and propose a model classification system.
Main Methods:
- Literature review of recent progress in mTOR pathway research.
- Analysis of mathematical modeling approaches applied to mTOR signaling.
- Integration of concepts from information and network theory.
Main Results:
- Mathematical models and quantitative experiments provide new insights into mTOR pathway function.
- Multiple feedback loops and crosstalk with other pathways are critical aspects of mTOR signaling.
- Information and network theory principles aid in dissecting mTOR network design.
Conclusions:
- A classification of mTOR models based on timescale and network complexity is proposed.
- Such classification is crucial for developing comprehensive and predictive mTOR pathway models.
- Integrated approaches are essential for advancing the understanding of cellular regulatory networks.
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