Lapatinib Resistance in Breast Cancer Cells Is Accompanied by Phosphorylation-Mediated Reprogramming of Glycolysis
Benjamin Ruprecht1,2, Esther A Zaal3, Jana Zecha1,4,5
1Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.
Abstract:
HER2/ERBB2-overexpressing breast cancers targeted effectively by the small-molecule kinase inhibitor lapatinib frequently acquire resistance to this drug. In this study, we employed explorative mass spectrometry to profile proteome, kinome, and phosphoproteome changes in an established model of lapatinib resistance to systematically investigate initial inhibitor response and subsequent reprogramming in resistance. The resulting dataset, which collectively contains quantitative data for >7,800 proteins, >300 protein kinases, and >15,000 phosphopeptides, enabled deep insight into signaling recovery and molecular reprogramming upon resistance. Our data-driven approach confirmed previously described mechanisms of resistance (e.g., AXL overexpression and PIK3 reactivation), revealed novel pharmacologically actionable targets, and confirmed the expectation of significant heterogeneity in molecular resistance drivers inducing distinct phenotypic changes. Furthermore, our approach identified an extensive and exclusively phosphorylation-mediated reprogramming of glycolytic activity, supported additionally by widespread changes of corresponding metabolites and an increased sensitivity towards glycolysis inhibition. Collectively, our multi-omic analysis offers deeper perspectives on cancer drug resistance and suggests new biomarkers and treatment options for lapatinib-resistant cancers. Cancer Res; 77(8); 1842-53. ©2017 AACR.
Insights
Lapatinib resistance in HER2-positive breast cancer involves complex signaling changes. Multi-omic analysis reveals novel targets and highlights altered glycolysis as a key adaptation, suggesting new therapeutic strategies.
Area of Science:
- Oncology
- Biochemistry
- Molecular Biology
Background:
- HER2/ERBB2-overexpressing breast cancers are often treated with lapatinib.
- Acquired resistance to lapatinib is a significant clinical challenge.
Purpose of the Study:
- To investigate proteome, kinome, and phosphoproteome changes in lapatinib-resistant breast cancer.
- To identify mechanisms of resistance and potential therapeutic targets.
Main Methods:
- Explorative mass spectrometry was used to profile proteomic, kinomic, and phosphoproteomic changes.
- Quantitative data was obtained for over 7,800 proteins, 300 kinases, and 15,000 phosphopeptides.
Main Results:
- Previously known resistance mechanisms like AXL overexpression and PIK3 reactivation were confirmed.
- Novel pharmacologically actionable targets were identified.
- A significant phosphorylation-mediated reprogramming of glycolytic activity was discovered, with corresponding metabolic changes and increased sensitivity to glycolysis inhibition.
Conclusions:
- Multi-omic analysis provides deep insights into cancer drug resistance.
- The findings suggest new biomarkers and treatment options for lapatinib-resistant cancers.
- Targeting altered glycolysis represents a potential therapeutic strategy.
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