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S-phase checkpoint regulations that preserve replication and chromosome integrity upon dNTP depletion
Michele Giannattasio1,2, Dana Branzei3
1Fondazione Istituto FIRC di Oncologia Molecolare (IFOM), Via Adamello 16, 20139, Milan, Italy. michele.giannattasio@ifom.eu.
Abstract:
DNA replication stress, an important source of genomic instability, arises upon different types of DNA replication perturbations, including those that stall replication fork progression. Inhibitors of the cellular pool of deoxynucleotide triphosphates (dNTPs) slow down DNA synthesis throughout the genome. Following depletion of dNTPs, the highly conserved replication checkpoint kinase pathway, also known as the S-phase checkpoint, preserves the functionality and structure of stalled DNA replication forks and prevents chromosome fragmentation. The underlying mechanisms involve pathways extrinsic to replication forks, such as those involving regulation of the ribonucleotide reductase activity, the temporal program of origin firing, and cell cycle transitions. In addition, the S-phase checkpoint modulates the function of replisome components to promote replication integrity. This review summarizes the various functions of the replication checkpoint in promoting replication fork stability and genome integrity in the face of replication stress caused by dNTP depletion.
Insights
DNA replication stress, caused by low deoxynucleotide triphosphates (dNTPs), can lead to genomic instability. The S-phase checkpoint protects DNA replication forks and genome integrity during these stressful conditions.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA replication stress is a major cause of genomic instability.
- Replication fork stalling occurs due to various DNA replication perturbations.
- Deoxynucleotide triphosphate (dNTP) pool depletion slows DNA synthesis genome-wide.
Purpose of the Study:
- To review the functions of the replication checkpoint in maintaining genome integrity.
- To summarize mechanisms that stabilize stalled replication forks under dNTP depletion.
- To highlight the role of the S-phase checkpoint in preventing chromosome fragmentation.
Main Methods:
- This review synthesizes existing research on DNA replication stress and the S-phase checkpoint.
- It examines pathways regulating ribonucleotide reductase activity.
- It analyzes the temporal program of origin firing and cell cycle transitions.
Main Results:
- The S-phase checkpoint is crucial for preserving stalled replication fork functionality and structure.
- Extrinsic pathways, including dNTP pool regulation and origin firing, are involved.
- The checkpoint also modulates replisome components to ensure replication integrity.
Conclusions:
- The S-phase checkpoint is essential for maintaining genome integrity during replication stress.
- It employs both extrinsic and intrinsic mechanisms to protect stalled replication forks.
- Understanding these pathways is vital for addressing genomic instability.
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