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Analysis of Combinatorial miRNA Treatments to Regulate Cell Cycle and Angiogenesis
Published on: March 30, 2019
Coordination of Myeloid Differentiation with Reduced Cell Cycle Progression by PU.1 Induction of MicroRNAs Targeting
Lauren A Solomon1,2, Shreya Podder1,2, Jessica He1,2
1Department of Microbiology and Immunology, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada.
Abstract:
During macrophage development, myeloid progenitor cells undergo terminal differentiation coordinated with reduced cell cycle progression. Differentiation of macrophages from myeloid progenitors is accompanied by increased expression of the E26 transformation-specific transcription factor PU.1. Reduced PU.1 expression leads to increased proliferation and impaired differentiation of myeloid progenitor cells. It is not understood how PU.1 coordinates macrophage differentiation with reduced cell cycle progression. In this study, we utilized cultured PU.1-inducible myeloid cells to perform genome-wide chromatin immunoprecipitation sequencing (ChIP-seq) analysis coupled with gene expression analysis to determine targets of PU.1 that may be involved in regulating cell cycle progression. We found that genes encoding cell cycle regulators and enzymes involved in lipid anabolism were directly and inducibly bound by PU.1 although their steady-state mRNA transcript levels were reduced. Inhibition of lipid anabolism was sufficient to reduce cell cycle progression in these cells. Induction of PU.1 reduced expression of E2f1, an important activator of genes involved in cell cycle and lipid anabolism, indirectly through microRNA 223. Next-generation sequencing identified microRNAs validated as targeting cell cycle and lipid anabolism for downregulation. These results suggest that PU.1 coordinates cell cycle progression with differentiation through induction of microRNAs targeting cell cycle regulators and lipid anabolism.
Insights
Transcription factor PU.1 coordinates macrophage differentiation with cell cycle reduction by inducing microRNAs. These microRNAs target genes involved in cell cycle progression and lipid metabolism, linking PU.1 to myeloid cell development.
Area of Science:
- Cell Biology
- Molecular Biology
- Immunology
Background:
- Macrophage development involves terminal differentiation and reduced cell cycle progression.
- The transcription factor PU.1 is crucial for macrophage differentiation, with reduced expression impairing this process and increasing proliferation.
- The mechanism by which PU.1 coordinates differentiation with cell cycle regulation remains unclear.
Purpose of the Study:
- To identify PU.1 targets involved in regulating cell cycle progression during macrophage differentiation.
- To elucidate how PU.1 influences cell cycle regulators and lipid metabolism.
- To investigate the role of microRNAs in mediating PU.1's effects on cell cycle and differentiation.
Main Methods:
- Genome-wide chromatin immunoprecipitation sequencing (ChIP-seq) in PU.1-inducible myeloid cells.
- Gene expression analysis to identify PU.1 targets.
- Next-generation sequencing to identify microRNAs.
- Validation of microRNA targets involved in cell cycle and lipid metabolism.
Main Results:
- PU.1 directly binds to genes regulating cell cycle and lipid anabolism, leading to reduced mRNA levels.
- Inhibition of lipid anabolism effectively reduces cell cycle progression.
- PU.1 induces microRNA 223, which indirectly downregulates E2f1, a key regulator of cell cycle and lipid metabolism.
- MicroRNAs targeting cell cycle and lipid anabolism were identified and validated.
Conclusions:
- PU.1 coordinates macrophage differentiation with cell cycle progression.
- This coordination is achieved through the induction of microRNAs that target cell cycle regulators and lipid anabolism pathways.
- PU.1's regulatory network involves microRNAs in controlling myeloid progenitor cell fate and proliferation.
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