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Identification of Antibacterial Immunity Proteins in Escherichia coli using MALDI-TOF-TOF-MS/MS and Top-Down Proteomic Analysis
Published on: May 23, 2021
Highly potent antimicrobial peptides from N-terminal membrane-binding region of E. coli MreB
Karabi Saikia1, Yalavarthi Durga Sravani1, Vibin Ramakrishnan1
1Department of Biosciences and Bioengineering Indian Institute of Technology Guwahati, Guwahati - 781 039, India.
Abstract:
Microbial pathogenesis is a serious health concern. The threat escalates as the existing conventional antimicrobials are losing their efficacy against the evolving pathogens. Peptides hold promise to be developed into next-generation antibiotics. Antimicrobial peptides adopt amphipathic structures that could selectively bind to and disrupt the microbial membranes. Interaction of proteins with membranes is central to all living systems and we reasoned that the membrane-binding domains in microbial proteins could be developed into efficient antimicrobials. This is an interesting approach as self-like sequences could elude the microbial strategies of degrading the antimicrobial peptides, one of the mechanisms of showing resistance to antimicrobials. We selected the 9-residue-long membrane-binding region of E. coli MreB protein. The 9-residue peptide (C-terminal amide) and its N-terminal acetylated analog displayed broad-spectrum activity, killing Gram-negative bacteria, Gram-positive bacteria, and fungi. Extension with a tryptophan residue at the N-terminus drastically improved the activity of the peptides with lethal concentrations ≤10 μM against all the organisms tested. The tryptophan-extended peptides caused complete killing of C. albicans as well as gentamicin and methicillin resistant S. aureus at 5 μM concentration. Lipid-binding studies and electron microscopic analyses of the peptide-treated microbes suggest membrane disruption as the mechanism of killing.
Insights
Researchers developed novel antimicrobial peptides from bacterial proteins to combat drug-resistant pathogens. These peptides show broad-spectrum activity, effectively killing bacteria and fungi by disrupting microbial membranes.
Area of Science:
- Microbiology
- Biochemistry
- Drug Discovery
Background:
- Antimicrobial resistance is a growing global health threat, diminishing the effectiveness of conventional antibiotics.
- Antimicrobial peptides (AMPs) are a promising alternative, often functioning by disrupting microbial cell membranes.
- Bacterial membrane-binding protein domains offer a novel source for developing self-like antimicrobial sequences.
Purpose of the Study:
- To investigate the potential of membrane-binding domains from microbial proteins as a source for next-generation antimicrobials.
- To design and synthesize peptide analogs based on the E. coli MreB protein's membrane-binding region.
- To evaluate the antimicrobial activity and mechanism of action of these novel peptides.
Main Methods:
- Selection of a 9-residue membrane-binding region from the E. coli MreB protein.
- Synthesis of peptide analogs, including C-terminal amidation and N-terminal acetylation.
- Further modification by N-terminal tryptophan extension.
- Assessment of broad-spectrum antimicrobial activity against Gram-negative bacteria, Gram-positive bacteria, and fungi.
- Mechanism of action studies using lipid-binding assays and electron microscopy.
Main Results:
- The 9-residue peptide and its acetylated analog exhibited broad-spectrum antimicrobial activity.
- N-terminal tryptophan extension significantly enhanced peptide efficacy, with lethal concentrations ≤10 μM.
- Tryptophan-extended peptides achieved complete killing of Candida albicans and resistant strains of Staphylococcus aureus (MRSA) at 5 μM.
- Studies indicated that the peptides kill microbes by disrupting their cell membranes.
Conclusions:
- Peptides derived from bacterial membrane-binding domains can be developed into potent, broad-spectrum antimicrobials.
- N-terminal tryptophan extension is a strategy to significantly boost antimicrobial peptide activity.
- Membrane disruption is the primary mechanism of action for these novel antimicrobial peptides, offering a potential solution to combat antimicrobial resistance.
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