Related Experiment Video
Updated: Mar 7, 2026

Probiotic Studies in Neonatal Mice Using Gavage
Published on: January 27, 2019
Antibiotic treatment at delivery shapes the initial oral microbiome in neonates
Luisa F Gomez-Arango1,2, Helen L Barrett1,2,3, H David McIntyre1,4
1School of Medicine, The University of Queensland, Brisbane Australia.
Insights
Maternal intrapartum antibiotics significantly shape the neonatal oral microbiome. Antibiotic exposure led to Proteobacteria dominance, while unexposed infants showed Streptococcaceae, Gemellaceae, and Lactobacillales families.
Area of Science:
- Microbiology
- Neonatal Health
- Microbiome Research
Background:
- The origins of the neonatal oral microbiome and factors influencing its early development remain largely unknown.
- Oral microorganisms play a critical role in maintaining health and disease states.
Purpose of the Study:
- To investigate the sources of the initial neonatal oral microbiome.
- To identify factors influencing early oral microbiota development in neonates.
- To examine the impact of maternal intrapartum antibiotics on neonatal oral microbiota composition.
Main Methods:
- Analysis of placental, maternal oral, and gut microbiome profiles in 36 mother-baby dyads using 16S rRNA sequencing.
- Quantitative PCR (qPCR) to analyze the expression of five β-lactamase class antibiotic resistance genes in infant oral microbiota.
- Comparison of neonatal oral microbiota composition with maternal oral, placental, and maternal gut microbiomes.
Main Results:
- The neonatal oral microbiota was primarily derived from the maternal oral source (65.35%).
- Two distinct neonatal oral microbiota profiles emerged, correlating with maternal intrapartum antibiotic exposure.
- Proteobacteria dominated in neonates exposed to antibiotics, whereas Streptococcaceae, Gemellaceae, and Lactobacillales were prevalent in unexposed neonates.
- Vim-1 antibiotic resistance gene was detected in 26% of exposed neonates.
Conclusions:
- Maternal intrapartum antibiotic treatment is a significant regulator of the initial neonatal oral microbiome.
- Antibiotic exposure during childbirth alters the early colonization patterns of the neonatal oral microbiota.
- Understanding these early microbial dynamics is crucial for neonatal health outcomes.
Abstract:
Oral microorganisms are important determinants of health and disease. The source of the initial neonatal microbiome and the factors dictating initial human oral microbiota development are unknown. This study aimed to investigate this in placental, oral and gut microbiome profiles from 36 overweight or obese mother-baby dyads as determined by 16S rRNA sequencing. Expression of five antibiotic resistance genes of the β-lactamase class was analysed in the infant oral microbiota samples by QPCR. The neonatal oral microbiota was 65.35% of maternal oral, 3.09% of placental, 31.56% of unknown and 0% of maternal gut origin. Two distinct neonatal oral microbiota profiles were observed: one strongly resembling the maternal oral microbiota and one with less similarity. Maternal exposure to intrapartum antibiotics explained the segregation of the profiles. Families belonging to Proteobacteria were abundant after antibiotics exposure while the families Streptococcaceae, Gemellaceae and Lactobacillales dominated in unexposed neonates. 26% of exposed neonates expressed the Vim-1 antibiotic resistance gene. These findings indicate that maternal intrapartum antibiotic treatment is a key regulator of the initial neonatal oral microbiome.
Related Concept Videos
Anatomy of the Intestines
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
Development of Immunocompetence
The initial cells that migrate from the fetal thymus settle within the skin and epithelial tissues lining the mouth, digestive tract, and in females, the uterus and vagina. These cells, including skin-based dendritic cells, serve as antigen-presenting cells, playing a key role in T cell activation.
Subsequent T...
Antibiotic Selection
Pharmacokinetics in Pediatric Patients: Overview and Drug Absorption
Microorganisms in Medicine and Therapeutics
Pharmacokinetics in Pediatric Patients: Drug Excretion

