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Updated: Mar 6, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Antimicrobial-resistant Escherichia coli and Enterococcus spp. isolated from Miranda donkey (Equus asinus): an old
Isabel Carvalho1,2,3, Rosa Del Campo4, Margarida Sousa1,2,3
1Functional Genomics and Proteomics Unit, Vila Real, Portugal.
Purpose:
The Miranda donkey (Equus asinus) is an endangeredasinine from Miranda do Douro region, located in the north east of Portugal. We studied the antimicrobial resistance and virulence genes in Escherichia coli and Enterococcus spp. isolates from these animals.
Methodology:
In March 2014, a total of 66 faecal samples were recovered from independent animals. Antibiotic resistance was determined by the disc diffusion method. Carriage of genes coding for antibiotic-resistant and virulent factors was analysed by PCR.
Results:
A total of 66 E. coli and 41 enterococcal isolates were detected, with Enterococcus faecium (61 %) and Enterococcus hirae (24 %) being the most prevalent species. For enterococcal isolates, high percentages of resistance rates to tetracycline (68.3 %), quinupristin/dalfopristin (51.2 %) and ciprofloxacin (48.8 %) were observed. The genes erm(A) and/or erm(B), tet(M) and/or tet(L), vat(D) and/or vat(E) and aph(3')-IIIa were also found. The most frequent virulence gene detected was gel(E), followed by ace, cpd and hyl. Escherichia coli isolates were highly resistant to streptomycin (78 %), whereas 39 % of them exhibited resistance to aminoglycosides and tetracycline. Genes sul1 and/or sul2 were detected in 66.7 % of trimethoprim/sulfamethoxazole-resistant isolates. The virulence genes detected were fim(A) (46 %) and cnf1 (27 %).
Conclusion:
To the best of our knowledge, this is the first report showing antibiotic resistance among Escherichiacoli and Enterococcus spp. isolates from the Miranda donkey in Portugal, indicating possible antibiotic-resistant bacterial reservoirs. However, the detection of these resistances presents a low risk for other animals and human beings in that rural area.
Insights
Antimicrobial resistance was studied in bacteria from endangered Miranda donkeys in Portugal. Findings indicate these donkeys may harbor antibiotic-resistant bacteria, posing a low risk to the local environment.
Area of Science:
- Veterinary Microbiology
- Animal Health
- Antimicrobial Resistance
Background:
- The Miranda donkey (Equus asinus) is an endangered breed native to northeastern Portugal.
- Understanding the health of endangered species is crucial for their conservation.
- Investigating microbial populations in these animals can reveal important ecological and health insights.
Purpose of the Study:
- To investigate antimicrobial resistance and virulence genes in Escherichia coli and Enterococcus spp. isolated from Miranda donkeys.
- To establish a baseline for antibiotic resistance in this unique animal population.
- To assess potential risks associated with resistant bacteria in the local ecosystem.
Main Methods:
- Faecal samples were collected from 66 independent Miranda donkeys in March 2014.
- Antibiotic resistance was determined using the disc diffusion method.
- Polymerase Chain Reaction (PCR) was employed to detect genes associated with antibiotic resistance and virulence factors.
Main Results:
- 66 Escherichia coli and 41 enterococcal isolates were identified, with Enterococcus faecium and Enterococcus hirae being most common.
- High resistance rates were observed in enterococci for tetracycline (68.3%), quinupristin/dalfopristin (51.2%), and ciprofloxacin (48.8%).
- Escherichia coli showed high resistance to streptomycin (78%) and significant resistance to aminoglycosides and tetracycline; virulence genes fim(A) and cnf1 were detected.
Conclusions:
- This study is the first to report antibiotic resistance in Escherichia coli and Enterococcus spp. from Miranda donkeys in Portugal.
- The findings suggest that Miranda donkeys may act as reservoirs for antibiotic-resistant bacteria.
- The detected resistances pose a low risk to other animals and humans in the studied rural area.
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