Substrate specificity of TOR complex 2 is determined by a ubiquitin-fold domain of the Sin1 subunit

Hisashi Tatebe1, Shinichi Murayama1, Toshiya Yonekura1

  • 1Graduate School of Biological Sciences, Nara Institute of Science and Technology, Nara, Japan.

Elife
|March 7, 2017
PubMed

Insights

The Sin1 protein

Area of Science:

  • Molecular Biology
  • Cell Signaling
  • Biochemistry

Background:

  • The target of rapamycin (TOR) protein kinase forms TOR complex 1 (TORC1) and TOR complex 2 (TORC2).
  • Sin1 is a subunit specific to TORC2, crucial for activating AGC-family kinases.
  • TORC2 regulates diverse cellular processes through substrate phosphorylation.

Purpose of the Study:

  • To investigate the role of Sin1 in TORC2 function and substrate recognition.
  • To determine the structural basis for Sin1's interaction with TORC2 substrates.
  • To explore the therapeutic potential of Sin1 in cancer treatment.

Main Methods:

  • Genetic manipulation in fission yeast (sin1 null mutant).
  • Protein domain engineering (Sin1CRIM fusion).
  • Solution structure determination of Sin1CRIM.
  • Biochemical assays for kinase activity and substrate binding.

Main Results:

  • Sin1 is not essential for TORC2 catalytic activity but mediates substrate binding.
  • The Sin1 conserved region in the middle (Sin1CRIM) specifically binds TORC2 substrate kinases.
  • Sin1CRIM can recruit the substrate Gad8 for phosphorylation independently of full-length Sin1.
  • Sin1CRIM possesses a ubiquitin-like fold with an acidic loop critical for substrate interaction.
  • Human Sin1CRIM exhibits conserved substrate-recognition function.

Conclusions:

  • Sin1 acts as a substrate-recognition module within TORC2.
  • The Sin1CRIM domain is a key determinant of TORC2 substrate specificity.
  • Sin1CRIM's conserved function suggests it as a potential drug target for modulating mTORC2 activity, particularly in cancer therapy.

Related Concept Videos

Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
3.0K
Protein Translocation Machinery on the ER Membrane01:28

Protein Translocation Machinery on the ER Membrane

The translocon complex situated on the ER membrane is the main gateway for the protein secretory pathway. It facilitates the transport of nascent peptides into the ER lumen and their insertion into the ER membrane.
Sec61 protein conducting channel
In eukaryotes, the translocon complex comprises a core heterotrimeric translocator channel called the Sec61 complex. This channel includes three transmembrane proteins, Sec61α, Sec61β, and Sec61γ, and is the largest subunit of the...
7.1K
The Electron Transport Chain01:30

The Electron Transport Chain

The electron transport chain or oxidative phosphorylation is an exothermic process in which free energy released during electron transfer reactions is coupled to ATP synthesis. This process is a significant source of energy in aerobic cells, and therefore inhibitors of the electron transport chain can be detrimental to the cell's metabolic processes.
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q...
20.8K
Tail-anchoring of Proteins in the ER Membrane01:45

Tail-anchoring of Proteins in the ER Membrane

Tail-anchored, or TA, proteins are estimated to make up to 3-5% of membrane proteins found in the eukaryotic cell. Such proteins have a single transmembrane domain located approximately 30 amino acid residues upstream from the C-terminal end. As a result, the signal recognition particle (SRP) cannot guide a TA protein to the ER membrane for cotranslational insertion. Hence, they are integrated into the ER membrane post-translationally using their C-terminal end as the anchor. TA proteins...
4.0K
Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
6.8K
ATP Synthase: Structure01:18

ATP Synthase: Structure

ATP synthase or ATPase is among the most conserved proteins found in bacteria, mammals, and plants. This enzyme can catalyze a forward reaction in response to the electrochemical gradient, producing ATP from ADP and inorganic phosphate. ATP synthase can also work in a reverse direction by hydrolyzing ATP and generating an electrochemical gradient. Different forms of ATP synthases have evolved special features to meet the specific demands of the cell. Based on their specific feature, ATP...
16.6K