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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long non-coding RNA NEAT1 is a transcriptional target of p53 and modulates p53-induced transactivation and
Masashi Idogawa1,2, Tomoko Ohashi1,3, Yasushi Sasaki1,2
1Department of Medical Genome Sciences, Research Institute for Frontier Medicine, Sapporo Medical University School of Medicine, Sapporo, Japan.
Abstract:
p53 is one of the most important tumor suppressor genes, and the direct transcriptional targets of p53 must be explored to elucidate its functional mechanisms. Thus far, the p53 targets that have been primarily studied are protein-coding genes. Our previous study revealed that several long non-coding RNAs (lncRNAs) are direct transcriptional targets of p53, and knockdown of specific lncRNAs modulates p53-induced apoptosis. In this study, analysis of next-generation chromatin immunoprecipitation-sequencing (ChIP-seq) data for p53 revealed that the lncRNA NEAT1 is a direct transcriptional target of p53. The suppression of NEAT1 induction by p53 attenuates the inhibitory effect of p53 on cancer cell growth and also modulates gene transactivation, including that of many lncRNAs. Furthermore, low expression of NEAT1 is related to poor prognosis in several cancers. These results indicate that the induction of NEAT1 expression contributes to the tumor-suppressor function of p53 and suggest that p53 and NEAT1 constitute a transcriptional network contributing to various biological functions and tumor suppression.
Insights
The tumor suppressor p53 directly targets the long non-coding RNA NEAT1. NEAT1 induction by p53 aids tumor suppression, suggesting a critical p53-NEAT1 network in cancer.
Area of Science:
- Molecular Biology
- Cancer Genetics
- Non-coding RNA Research
Background:
- The tumor suppressor p53 plays a crucial role in preventing cancer by regulating gene expression.
- Understanding p53's direct transcriptional targets is key to elucidating its tumor-suppressive functions.
- While protein-coding genes have been extensively studied, the role of long non-coding RNAs (lncRNAs) as p53 targets is an emerging area.
Purpose of the Study:
- To identify novel direct transcriptional targets of p53, focusing on lncRNAs.
- To investigate the functional role of the lncRNA NEAT1 in p53-mediated tumor suppression.
- To explore the relationship between NEAT1 expression, p53 activity, and cancer prognosis.
Main Methods:
- Analysis of next-generation chromatin immunoprecipitation-sequencing (ChIP-seq) data for p53 binding.
- Experimental validation of NEAT1 as a direct transcriptional target of p53.
- Assessment of NEAT1's impact on cancer cell growth and gene transactivation.
- Correlation analysis between NEAT1 expression levels and patient prognosis in various cancers.
Main Results:
- The lncRNA NEAT1 was identified as a direct transcriptional target of p53 using ChIP-seq data.
- Suppression of NEAT1 induction by p53 was found to reduce p53's inhibitory effect on cancer cell growth.
- NEAT1 modulates gene transactivation, including that of other lncRNAs.
- Low expression of NEAT1 is significantly associated with poor prognosis in several types of cancer.
Conclusions:
- NEAT1 induction is a critical component of the tumor-suppressor function of p53.
- The p53-NEAT1 axis represents a novel transcriptional network involved in diverse biological functions and tumor suppression.
- NEAT1 may serve as a potential biomarker for cancer prognosis and a therapeutic target.
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