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Updated: Mar 6, 2026

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Clinical Trials in the Genomic Era
Erel Joffe1, Alexia Iasonos1, Anas Younes1
1All authors: Memorial Sloan Kettering Cancer Center, New York, NY.
Abstract:
Personalization of therapy to target specific molecular pathways has been placed in the forefront of cancer research. Initial reports from clinical trials designed to select patients for appropriate treatment on the basis of tumor characteristics not only have generated considerable excitement but also have identified several challenges. These challenges include the overcoming of regulatory and logistic difficulties, identification of the best selection biomarkers and diagnostic platforms that can be applied in the clinical setting, definition of relevant outcomes in small preselected patient populations, and the design of methods that facilitate rapid enrollment and interpretation of clinical trials by aggregating data across histologically diverse malignancies with common genetic alterations. Furthermore, because our knowledge of the functional consequences of many genetic alterations lags, investigators and sponsors struggle with choosing between ideal clinical trial designs and more practical ones. These challenges are amplified when more than one biomarker is used to select patients for a combination of targeted agents. This review summarizes the current status and challenges of clinical trials in the genomic era and proposes ways to address these challenges.
Insights
Personalized cancer therapy faces challenges in clinical trials, including biomarker selection and trial design. Addressing these issues is crucial for advancing precision oncology and improving patient outcomes in the genomic era.
Area of Science:
- Oncology
- Genomics
- Clinical Trials
Background:
- Precision medicine aims to tailor cancer treatments to individual molecular pathways.
- Genomic era cancer research focuses on targeted therapies based on tumor characteristics.
- Clinical trials for targeted therapies face significant logistical and regulatory hurdles.
Purpose of the Study:
- To review the current landscape of clinical trials in cancer genomics.
- To identify and discuss the key challenges in conducting these trials.
- To propose strategies for overcoming these challenges and advancing precision oncology.
Main Methods:
- Review of current literature on cancer clinical trials in the genomic era.
- Analysis of challenges related to biomarker selection, diagnostic platforms, and outcome definition.
- Discussion of trial design considerations for targeted therapies and combination treatments.
Main Results:
- Clinical trials in the genomic era face challenges in regulatory approval, logistics, and biomarker validation.
- Defining relevant outcomes in small, preselected patient populations is difficult.
- Integrating data across diverse malignancies with common genetic alterations requires innovative trial designs.
- Choosing between ideal and practical trial designs is a struggle due to knowledge gaps in genetic alteration consequences.
Conclusions:
- Overcoming challenges in clinical trial design and execution is essential for realizing the potential of personalized cancer therapy.
- Standardizing biomarker selection and diagnostic platforms will facilitate clinical application.
- Innovative trial designs are needed to aggregate data and accelerate drug development in precision oncology.
- Addressing these challenges will pave the way for more effective cancer treatments in the genomic era.
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