CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin
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Updated: Mar 6, 2026

High-throughput Measurement of Plasma Membrane Resealing Efficiency in Mammalian Cells
Published on: January 7, 2019
Katharina van Pee1, Alexander Neuhaus1, Edoardo D'Imprima1
1Department of Structural Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Abstract:
Many pathogenic bacteria produce pore-forming toxins to attack and kill human cells. We have determined the 4.5 Å structure of the ~2.2 MDa pore complex of pneumolysin, the main virulence factor of Streptococcus pneumoniae, by cryoEM. The pneumolysin pore is a 400 Å ring of 42 membrane-inserted monomers. Domain 3 of the soluble toxin refolds into two ~85 Å β-hairpins that traverse the lipid bilayer and assemble into a 168-strand β-barrel. The pore complex is stabilized by salt bridges between β-hairpins of adjacent subunits and an internal α-barrel. The apolar outer barrel surface with large sidechains is immersed in the lipid bilayer, while the inner barrel surface is highly charged. Comparison of the cryoEM pore complex to the prepore structure obtained by electron cryo-tomography and the x-ray structure of the soluble form reveals the detailed mechanisms by which the toxin monomers insert into the lipid bilayer to perforate the target membrane.
Insights
Pneumolysin, a toxin from Streptococcus pneumoniae, forms a large pore in human cells. Cryo-electron microscopy revealed the 4.5 Å structure of this ~2.2 MDa pore complex, detailing its membrane insertion mechanism.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Pathogenic bacteria utilize pore-forming toxins to damage host cells.
- Pneumolysin is a key virulence factor of Streptococcus pneumoniae, a common human pathogen.
Purpose of the Study:
- To determine the high-resolution structure of the pneumolysin pore complex.
- To elucidate the mechanism of pneumolysin-mediated membrane perforation.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to determine the 4.5 Å structure of the pneumolysin pore complex.
- Comparison with structures from electron cryo-tomography (prepore) and X-ray crystallography (soluble form) was performed.
Main Results:
- The pneumolysin pore is a large ring (~2.2 MDa) composed of 42 membrane-inserted monomers.
- Monomers assemble into a 168-strand β-barrel structure, stabilized by salt bridges and an internal α-barrel.
- The pore exhibits distinct apolar outer and charged inner surfaces, facilitating lipid bilayer interaction and perforation.
Conclusions:
- The study provides detailed insights into the structural organization of the pneumolysin pore.
- The findings reveal the molecular mechanisms of toxin insertion and membrane damage by pneumolysin.
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